Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2093 ATGCAAGGGCAAAGGAGTAGTGTCGGTTCCTTGTCAGAAACCATAAACTTTGAGCATGGATCTTCATCAAATAATCCTGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGAATACCAGATTATTTGTTGCCTACTTCTGATATTAATACTGGATATGTAAGCTCTGTGAGCCATGAGCAACGAAGTTTGAGCAGATGGAGCTTGGGTGAGCCTAGCTCTTGCGACATGCAAACTGAGGCACTACCTGATGAGCAGAAAGCTGAGCTTGGATGGTCTTCAGTGACTCGTGATGCAGATGGTCCCGTTACAGATAACCGACTCTGTGAGCCGTCAAATAATCCTTCACTGGGTCATGTGAATTTAAGCCCACTGATTATACAAAATTCCAATTCTAATGCTATTCCTCACAATCTTAACTTAAATGCAAGTTTTGCTAGTCATGGAGGTGACAATAGCAGAGTTAATGAAGGTTCTAACGTGTATAAATCTAGTGGATCAGAAGAAGGGAGGATTTTATGTTCTAGTGCATCTGATCCTCTTTTACTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTGCAAATGATGGTAGAGCAGGCTCTTCCTTGGATGGTCGTCGAGCACCCTGTAAAAGAAAAGCTATTGAAGGAAGTGTTGCACAATCCTCAATAAGTGGAAGCAGTAACTACTCTCAGCATATTGAAAGTGGTGCTGAGCCCCCTCTTCCAGTTTTTCCTGGTCGCTACAACACAGGCAATAGGTTAACCATACCTGCTCCACCAGCACGAATGAATCAAGCCTCTCTACGAGGTGCAGGCGAATTGACTTCCAACAGCTTCTCTGAGTCAATTGTTGCAGAAAGCTCAGACAGTTCTCAAAGAAACTATCGTATAAGGATTAGTTCTTCAAATGCACAAGATTCTTTTTCATCAGCAGGAACTACTGTTAGGCATCCTGGGGCCTCATCTTCCCAGCTGCCAACAAGACTTCTACCTGCCGAGCATGTATTAGACTTGAGGCCAGCACCAGCTGTAGACAATATACCTGCTCTAGGTCAGCCAATTATGATACATGTACCTGCTTTACCTCGAACTCTGCAACCATATAGGTGGAATGGGAGCTCTACTTCAAGAAGTGGCAGTTCATCAAGCTCTGCAGGAGAGAGACAGGTGGTGCAACGTGAGGAGGTGAGACCAAGCAACATGGGAAGAAACGTATCTGAACATCCCATGTTTGTCCCAGCAAATGAGCTGAGGAATTTGGTTCGTAATCCATCCAGTAGAGGTATAACATCTTCGAACTTGTCCATTCCGGGAAATGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGGGTCCATCCCTCTGCTGGACCTTGGATGCCTCCTGAGAACAGTCCAACGCAGTTTCCCAGGAGGCTAACAGAATACGTTCGTAGGCAGCTATTTTCTTCTGCTACAAATGAGTCTGGAGGTAGGACAAGTAATTATTCACAGCGATCAGGTTCTACTTCTGCTCAGGATATGGTTCTTTCATCTGGATCTGGCCGCCGGGGGCACGGTTTATTGCAACCGAGGTCTGCATTATGGATGGAAAGAAGAGGTGACGGTGGACTTGGTCTTCCCTATTCTTTACGAACCTTAGCTGCTTCTGGTGAAGGAAGTGACAATAATAGATTAGTATCTGAGCAGATTCGCAATGTCTTGGGCCTTGTCCGCAGGGGTGAAAGCTTACGAGTAGAGGTAGGATCCTTATTGGTGCCATATCATGTGCAATGGGTGCATTGGCGAATTTACATGATTGCATTGAGATACAAGAAGTCATTTATGTTACATGATGTGATGATCCTGGACCAGTCACTATTTTTTGGGATGGCTGATATTTATGATAGGCACAGGGATATGCGTCTCGACGTTGATAACATGTCGTATGAGGAATTGTTGGCTTTGGAAGAGCGTATCGGAAATGTCAACACCGGACTCAACGAAGAGACGATAGTTGCCCGACTGAAACAAAAGAAGCACATCAATGCCGCTGAATCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGAGCAAACCTGGTGGCGGTTGCTTAAAAGGAGTAAAGCAACGGAATCGGGGGACGCCTCAAAGGGGGGGAATGCAGAATGCAGAATGCTATGAAGTTGCTTGCCAATTCTAG 2202 45.32 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIPDYLLPTSDINTGYVSSVSHEQRSLSRWSLGEPSSCDMQTEALPDEQKAELGWSSVTRDADGPVTDNRLCEPSNNPSLGHVNLSPLIIQNSNSNAIPHNLNLNASFASHGGDNSRVNEGSNVYKSSGSEEGRILCSSASDPLLLPSGNSGLPVVANDGRAGSSLDGRRAPCKRKAIEGSVAQSSISGSSNYSQHIESGAEPPLPVFPGRYNTGNRLTIPAPPARMNQASLRGAGELTSNSFSESIVAESSDSSQRNYRIRISSSNAQDSFSSAGTTVRHPGASSSQLPTRLLPAEHVLDLRPAPAVDNIPALGQPIMIHVPALPRTLQPYRWNGSSTSRSGSSSSSAGERQVVQREEVRPSNMGRNVSEHPMFVPANELRNLVRNPSSRGITSSNLSIPGNVASTSRVGSSSGVHPSAGPWMPPENSPTQFPRRLTEYVRRQLFSSATNESGGRTSNYSQRSGSTSAQDMVLSSGSGRRGHGLLQPRSALWMERRGDGGLGLPYSLRTLAASGEGSDNNRLVSEQIRNVLGLVRRGESLRVEVGSLLVPYHVQWVHWRIYMIALRYKKSFMLHDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLNEETIVARLKQKKHINAAESQVEEEPCCVCQSKPGGGCLKGVKQRNRGTPQRGGMQNAECYEVACQF 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39907952 39912012 - Maker00025319 Lcy13g2093 652398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2093 733 MobiDBLite consensus disorder prediction 375 395 - -
Lcy13g2093 733 MobiDBLite consensus disorder prediction 489 527 - -
Lcy13g2093 733 MobiDBLite consensus disorder prediction 375 416 - -
Lcy13g2093 733 MobiDBLite consensus disorder prediction 489 517 - -
Lcy13g2093 733 MobiDBLite consensus disorder prediction 308 331 - -
Lcy13g2093 733 MobiDBLite consensus disorder prediction 429 475 - -
Lcy13g2093 733 MobiDBLite consensus disorder prediction 223 240 - -
Lcy13g2093 733 MobiDBLite consensus disorder prediction 219 250 - -
Lcy13g2093 733 MobiDBLite consensus disorder prediction 1 30 - -
Lcy13g2093 733 MobiDBLite consensus disorder prediction 429 457 - -
Lcy13g2093 733 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 211 698 IPR045191 GO:0061630(PANTHER)|GO:0061630(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2093 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2093 Lcy-Chr13:39907952 Lcy9g1333 Lcy-Chr9:38101132 3.04E-11 dispersed
Lcy13g2093 Lcy-Chr13:39907952 Lcy6g0623 Lcy-Chr6:5936473 1.49E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55