Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2095 ATGCGAGTCTTCACCATGGGATTTAGCATGAAGGTTCATCAGTTTGCACGTGGCTTTTGGGACGAGCCCTCTCTCTCGCTTGGTTGCAAGCGCTTACGCCCTCTTGCTCCAAAGCTTAACCAACAACAACCCATTCCCGACTCCACTACCACCACCACAACCACGACGCTCACCGCCTTCGACCTTAAGACCTTCATCAGACCCGATTGTGGCCCGAGAAAACTCGGCTCCTCTGACCACAAGAAAGACTCTTCTTCGCCCGGCCAGACAGTAGAGACGCATCCTGGAGGGACACGATGGAATCCGACGCAAGAACAGATAGGGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCGAATGCGCAACAGATCGAACAGATCACTGCCCAGCTCGGCAAGTACGGCAAGATCGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGAGAGCGACAGAAACAGAAGCGCAACAGTCTCGGTCTTGCTCACTCCCCTAGAACACCCCCTCCTCCCATCATCACCGCCCTCCCCTTCGACCCTTCGGGAGAGGAAGATAGTCCGTACAAGAGGAAGTGCATGAGCTGGGGGTTTGAGTGTTTGGTAGAGGATAGCAGTATATTGTGTAAAAAGGAAGAGGAAGGTGATAGGACTCTGGAGTTATTCCCGTTGCACCCAGAAGGCAGATGA 702 52.14 MRVFTMGFSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLNQQQPIPDSTTTTTTTTLTAFDLKTFIRPDCGPRKLGSSDHKKDSSSPGQTVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPPPPIITALPFDPSGEEDSPYKRKCMSWGFECLVEDSSILCKKEEEGDRTLELFPLHPEGR 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39934120 39935317 - Maker00025164 Lcy13g2095 652400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2095 233 PANTHER WUSCHEL-RELATED HOMEOBOX 4 9 233 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Lcy13g2095 233 MobiDBLite consensus disorder prediction 156 191 - -
Lcy13g2095 233 Gene3D - 97 164 - -
Lcy13g2095 233 ProSiteProfiles 'Homeobox' domain profile. 93 158 IPR001356 GO:0003677(InterPro)
Lcy13g2095 233 MobiDBLite consensus disorder prediction 69 104 - -
Lcy13g2095 233 CDD homeodomain 98 159 IPR001356 GO:0003677(InterPro)
Lcy13g2095 233 MobiDBLite consensus disorder prediction 73 87 - -
Lcy13g2095 233 MobiDBLite consensus disorder prediction 88 104 - -
Lcy13g2095 233 FunFam WUSCHEL-related homeobox 4 97 164 - -
Lcy13g2095 233 Pfam Homeodomain 98 157 IPR001356 GO:0003677(InterPro)
Lcy13g2095 233 SUPERFAMILY Homeodomain-like 93 163 IPR009057 -
Lcy13g2095 233 SMART HOX_1 95 162 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2095 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0198 Lcy-Chr11:2378819 Lcy13g2095 Lcy-Chr13:39934120 7.45E-29 dispersed
Lcy13g2095 Lcy-Chr13:39934120 Lcy5g2383 Lcy-Chr5:46630837 1.18E-26 dispersed
Lcy13g2095 Lcy-Chr13:39934120 Lcy2g0387 Lcy-Chr2:3229147 7.21E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g2383 . 3 201 Wox Gene Family AT3G18010 57.5 1.5e-50 197.6
Lcy2g0387 . 1 156 Wox Gene Family AT3G18010 56.2 9.3e-40 161.8
Lcy6g2349 . 1 276 Wox Gene Family AT4G35550 50.2 1.9e-64 243.4
Lcy6g2349 . 34 160 Wox Gene Family AT1G20700 58.5 1.9e-37 153.3
Lcy13g2095 . 10 164 Wox Gene Family AT1G46480 68.1 5.2e-53 204.9
Lcy5g2383 . 3 201 Wox Gene Family AT3G18010 57.5 1.5e-50 197.6
Lcy2g0387 . 1 156 Wox Gene Family AT3G18010 56.2 9.3e-40 161.8
Lcy13g2095 . 10 164 Wox Gene Family AT1G46480 68.1 5.2e-53 204.9
Lcy6g2349 . 1 276 Wox Gene Family AT4G35550 50.2 1.9e-64 243.4
Lcy6g2349 . 34 160 Wox Gene Family AT1G20700 58.5 1.9e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19444 None None None None Lcy TF