Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g2095 | ATGCGAGTCTTCACCATGGGATTTAGCATGAAGGTTCATCAGTTTGCACGTGGCTTTTGGGACGAGCCCTCTCTCTCGCTTGGTTGCAAGCGCTTACGCCCTCTTGCTCCAAAGCTTAACCAACAACAACCCATTCCCGACTCCACTACCACCACCACAACCACGACGCTCACCGCCTTCGACCTTAAGACCTTCATCAGACCCGATTGTGGCCCGAGAAAACTCGGCTCCTCTGACCACAAGAAAGACTCTTCTTCGCCCGGCCAGACAGTAGAGACGCATCCTGGAGGGACACGATGGAATCCGACGCAAGAACAGATAGGGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCGAATGCGCAACAGATCGAACAGATCACTGCCCAGCTCGGCAAGTACGGCAAGATCGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGAGAGCGACAGAAACAGAAGCGCAACAGTCTCGGTCTTGCTCACTCCCCTAGAACACCCCCTCCTCCCATCATCACCGCCCTCCCCTTCGACCCTTCGGGAGAGGAAGATAGTCCGTACAAGAGGAAGTGCATGAGCTGGGGGTTTGAGTGTTTGGTAGAGGATAGCAGTATATTGTGTAAAAAGGAAGAGGAAGGTGATAGGACTCTGGAGTTATTCCCGTTGCACCCAGAAGGCAGATGA | 702 | 52.14 | MRVFTMGFSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLNQQQPIPDSTTTTTTTTLTAFDLKTFIRPDCGPRKLGSSDHKKDSSSPGQTVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPPPPIITALPFDPSGEEDSPYKRKCMSWGFECLVEDSSILCKKEEEGDRTLELFPLHPEGR | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 39934120 | 39935317 | - | Maker00025164 | Lcy13g2095 | 652400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g2095 | 233 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 9 | 233 | IPR044186 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro) | |
Lcy13g2095 | 233 | MobiDBLite | consensus disorder prediction | 156 | 191 | - | - | |
Lcy13g2095 | 233 | Gene3D | - | 97 | 164 | - | - | |
Lcy13g2095 | 233 | ProSiteProfiles | 'Homeobox' domain profile. | 93 | 158 | IPR001356 | GO:0003677(InterPro) | |
Lcy13g2095 | 233 | MobiDBLite | consensus disorder prediction | 69 | 104 | - | - | |
Lcy13g2095 | 233 | CDD | homeodomain | 98 | 159 | IPR001356 | GO:0003677(InterPro) | |
Lcy13g2095 | 233 | MobiDBLite | consensus disorder prediction | 73 | 87 | - | - | |
Lcy13g2095 | 233 | MobiDBLite | consensus disorder prediction | 88 | 104 | - | - | |
Lcy13g2095 | 233 | FunFam | WUSCHEL-related homeobox 4 | 97 | 164 | - | - | |
Lcy13g2095 | 233 | Pfam | Homeodomain | 98 | 157 | IPR001356 | GO:0003677(InterPro) | |
Lcy13g2095 | 233 | SUPERFAMILY | Homeodomain-like | 93 | 163 | IPR009057 | - | |
Lcy13g2095 | 233 | SMART | HOX_1 | 95 | 162 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0198 | Lcy-Chr11:2378819 | Lcy13g2095 | Lcy-Chr13:39934120 | 7.45E-29 | dispersed | |
Lcy13g2095 | Lcy-Chr13:39934120 | Lcy5g2383 | Lcy-Chr5:46630837 | 1.18E-26 | dispersed | |
Lcy13g2095 | Lcy-Chr13:39934120 | Lcy2g0387 | Lcy-Chr2:3229147 | 7.21E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19444 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g2095 | - | - | - | 0.0 |