Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2095 ATGCGAGTCTTCACCATGGGATTTAGCATGAAGGTTCATCAGTTTGCACGTGGCTTTTGGGACGAGCCCTCTCTCTCGCTTGGTTGCAAGCGCTTACGCCCTCTTGCTCCAAAGCTTAACCAACAACAACCCATTCCCGACTCCACTACCACCACCACAACCACGACGCTCACCGCCTTCGACCTTAAGACCTTCATCAGACCCGATTGTGGCCCGAGAAAACTCGGCTCCTCTGACCACAAGAAAGACTCTTCTTCGCCCGGCCAGACAGTAGAGACGCATCCTGGAGGGACACGATGGAATCCGACGCAAGAACAGATAGGGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCGAATGCGCAACAGATCGAACAGATCACTGCCCAGCTCGGCAAGTACGGCAAGATCGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGAGAGCGACAGAAACAGAAGCGCAACAGTCTCGGTCTTGCTCACTCCCCTAGAACACCCCCTCCTCCCATCATCACCGCCCTCCCCTTCGACCCTTCGGGAGAGGAAGATAGTCCGTACAAGAGGAAGTGCATGAGCTGGGGGTTTGAGTGTTTGGTAGAGGATAGCAGTATATTGTGTAAAAAGGAAGAGGAAGGTGATAGGACTCTGGAGTTATTCCCGTTGCACCCAGAAGGCAGATGA 702 52.14 MRVFTMGFSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLNQQQPIPDSTTTTTTTTLTAFDLKTFIRPDCGPRKLGSSDHKKDSSSPGQTVETHPGGTRWNPTQEQIGILEMLYRRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLAHSPRTPPPPIITALPFDPSGEEDSPYKRKCMSWGFECLVEDSSILCKKEEEGDRTLELFPLHPEGR 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39934120 39935317 - Maker00025164 Lcy13g2095 652400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2095 233 PANTHER WUSCHEL-RELATED HOMEOBOX 4 9 233 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Lcy13g2095 233 MobiDBLite consensus disorder prediction 156 191 - -
Lcy13g2095 233 Gene3D - 97 164 - -
Lcy13g2095 233 ProSiteProfiles 'Homeobox' domain profile. 93 158 IPR001356 GO:0003677(InterPro)
Lcy13g2095 233 MobiDBLite consensus disorder prediction 69 104 - -
Lcy13g2095 233 CDD homeodomain 98 159 IPR001356 GO:0003677(InterPro)
Lcy13g2095 233 MobiDBLite consensus disorder prediction 73 87 - -
Lcy13g2095 233 MobiDBLite consensus disorder prediction 88 104 - -
Lcy13g2095 233 FunFam WUSCHEL-related homeobox 4 97 164 - -
Lcy13g2095 233 Pfam Homeodomain 98 157 IPR001356 GO:0003677(InterPro)
Lcy13g2095 233 SUPERFAMILY Homeodomain-like 93 163 IPR009057 -
Lcy13g2095 233 SMART HOX_1 95 162 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0198 Lcy-Chr11:2378819 Lcy13g2095 Lcy-Chr13:39934120 7.45E-29 dispersed
Lcy13g2095 Lcy-Chr13:39934120 Lcy5g2383 Lcy-Chr5:46630837 1.18E-26 dispersed
Lcy13g2095 Lcy-Chr13:39934120 Lcy2g0387 Lcy-Chr2:3229147 7.21E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19444 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2095 - - - 0.0