Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2102 ATGGTACCACCGTATGCGCTTGATGCTCTGTACTGCTCAGAGGAGCACTGGGAGGAGGAGGAAGAAGAAGGAAGTGGTTTTGACGAGCAACATTACACTAACTTAACGAGTGAATCGAATTGTGCGATTGTGGCAGAGCAGGACCTGTTTTGGGAAAACGAAGAACTAATCTCTCTTCTCTCTCGAGAGAAGCCTAATGAACTCTTTAAAAACATTCAGACCGACCCTTCTCTTGCTGCCGCCCGACGAGGTGCCGTCGAGTGGATGCTGAAGGTCAATGCCCATTACTCTTTCTCTGCTCTCACGGCCGTTCTCGCCGTCGATTACTTCGACCGGTTTTTGTCCTGTTTTCATTTTCAAAGAGACAAGCCATGGATGGCTCAGCTTGCTGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACCCAAGTGCCTCTTTTGTTGGACCTACAAGTGGAAGACAGTAGATATCTGTTCGAAGCTAAGACAATTAAGAAGATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCGTTTGTGGATTATATCTCAAGAAGGCTTGGATTCAAGGACCATTTCTGCTGGGAAATTCTTTGGCGGTGTGAACGAGCCATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCTATGGAGCCCCACCTCGGCGTTGAATACGATTCCCAGCTTCTTAACATCCTTGGAATCGACAAGGGGAATGTGGAGGAATGCTGTAAACTGATCTCGGATGCATCGAGAAGAAACGGCAACCAATTTAAGAAACGCAAATTCGGGTCGATTCCAGGCAGCCCGAACGGCGTCATTGACGTGTCATTCAGCTCCGATAGCTCGAACGACTCATGGTCGGTGGCCTCGTCGGTTTCATCCTCGCCGGAGCCATTAACGAAGAAGAACAGAGCAATGGATCAACCTCTGGAAATGGCGAACCATTCAACAGCTACAAATTTGCTCGACGTTCCTCGCTAG 1065 48.17 MVPPYALDALYCSEEHWEEEEEEGSGFDEQHYTNLTSESNCAIVAEQDLFWENEELISLLSREKPNELFKNIQTDPSLAAARRGAVEWMLKVNAHYSFSALTAVLAVDYFDRFLSCFHFQRDKPWMAQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYISRRLGFKDHFCWEILWRCERAILSVILESDFMSFLPSVMATATMLHVFKAMEPHLGVEYDSQLLNILGIDKGNVEECCKLISDASRRNGNQFKKRKFGSIPGSPNGVIDVSFSSDSSNDSWSVASSVSSSPEPLTKKNRAMDQPLEMANHSTATNLLDVPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39997581 39999599 + Maker00025175 Lcy13g2102 652407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2102 354 MobiDBLite consensus disorder prediction 310 354 - -
Lcy13g2102 354 SUPERFAMILY Cyclin-like 166 279 IPR036915 -
Lcy13g2102 354 PANTHER CYCLINS 37 274 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy13g2102 354 ProSitePatterns Cyclins signature. 82 113 IPR048258 -
Lcy13g2102 354 Gene3D - 66 182 - -
Lcy13g2102 354 FunFam D3-type cyclin 75 182 - -
Lcy13g2102 354 CDD CYCLIN_AtCycD-like_rpt2 184 274 - -
Lcy13g2102 354 SMART Cyclin_C_2 184 309 IPR004367 -
Lcy13g2102 354 Gene3D - 64 272 - -
Lcy13g2102 354 Pfam Cyclin, N-terminal domain 68 182 IPR006671 -
Lcy13g2102 354 SMART cyclin_7 87 175 IPR013763 -
Lcy13g2102 354 CDD CYCLIN_AtCycD-like_rpt1 81 179 - -
Lcy13g2102 354 MobiDBLite consensus disorder prediction 310 329 - -
Lcy13g2102 354 SUPERFAMILY Cyclin-like 53 182 IPR036915 -
Lcy13g2102 354 MobiDBLite consensus disorder prediction 338 354 - -
Lcy13g2102 354 Pfam Cyclin, C-terminal domain 184 284 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2102 Lcy-Chr13:39997581 Lcy1g0824 Lcy-Chr1:7022381 1.77E-53 dispersed
Lcy1g0964 Lcy-Chr1:8459469 Lcy13g2102 Lcy-Chr13:39997581 8.70E-73 wgd
Lcy13g2102 Lcy-Chr13:39997581 Lcy4g0223 Lcy-Chr4:2764751 1.63E-84 wgd
Lcy13g2102 Lcy-Chr13:39997581 Lcy6g0505 Lcy-Chr6:4727139 2.24E-107 wgd
Lcy13g2102 Lcy-Chr13:39997581 Lcy9g2069 Lcy-Chr9:45469734 6.61E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2102 K14505 - csv:101205442 522.702