Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2114 ATGGCCGAGACTGAGAACTGTGTCCGTGTCACTCGTGCTTCTAAGAAGAGAGCTGCGGCGGCTGCCATGGTCGAGGATCAACCCGCGAATAAGAAGCGGGTGGTTCTCGGAGAGCTTCCGAACGTTCAGAATGTTTCTGGGTCACTGCCACAGAAGAGGAAGGCCAAGTCTCAGATGACCAAATGCAAGCCTAAAAAGAGGAGTAAGATTGGTGTTGCTCCAACGATCAAGACGACTGTTGTTGTTGAAGATAATGATCCCAAGTTGACAGTTGATGATCTTTTGGACGACCCAGAGATGAAGGGGCCTTATTCCTCGGATATTTATGCTTATCTTCGCAAGATGGAGGCGGAACCAAAAAGAAGGCCGATTCCTAATTACATAGAGAAGATTCAGACTGATGTAAGTGCCAATATGAGAGGAGTTTTGGTTGATTGGATGGTTGAGGTTGCAGAGGAATACAAGCTCGGTGCGGATACTCTGTATCTATCAATCTCTTACATCGATAGATTCCTATCAATGAACATCCTCAGTAGGCAAAGGCTTCAATTGTTGGGGGTTTCTTCAATGCTGATTGCCTCGAAATATGAAGAGATCACCCCTCCACATGTGGAAGATTTCTGTTATATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATCCTTAAATCCTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGCAAACACCAAATCTGCAGTTGGAATTTCTGGGTTATTACCTTGCTGAGCTTAGCTTGTTGGACTATAACTTTGTCAAGTTCTTGCCTTCTTTGATTGCTGCTTCAGTCGTTTTTCTTGCAAAATTTATCATCCGGCCAAAGCTGCATCCTTGGGGTTCAAACTTGCAACAATATACAGGCTACAAGCCAGCTGATTTGAGGCCTTGCGTCTTTCTGTTACATGATTTGTATATGGCTAGAAGAGGAGGGTCTCTGATAGCTGTGAGGGAAAAATACAAGCTACATAGGTTCAAATGTGTGGCAATGATGCCTTCACCTCCTGAGATACCATTTTCCTATTTTGAAGAAGCTTAG 1089 43.71 MAETENCVRVTRASKKRAAAAAMVEDQPANKKRVVLGELPNVQNVSGSLPQKRKAKSQMTKCKPKKRSKIGVAPTIKTTVVVEDNDPKLTVDDLLDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGADTLYLSISYIDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRQTPNLQLEFLGYYLAELSLLDYNFVKFLPSLIAASVVFLAKFIIRPKLHPWGSNLQQYTGYKPADLRPCVFLLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40077248 40079536 - Maker00025168 Lcy13g2114 652419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2114 362 SMART Cyclin_C_2 238 351 IPR004367 -
Lcy13g2114 362 ProSitePatterns Cyclins signature. 140 171 IPR048258 -
Lcy13g2114 362 FunFam Cyclin A1 225 347 - -
Lcy13g2114 362 MobiDBLite consensus disorder prediction 45 68 - -
Lcy13g2114 362 Gene3D - 107 347 - -
Lcy13g2114 362 Gene3D - 123 236 - -
Lcy13g2114 362 PANTHER CYCLINS 62 338 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy13g2114 362 SUPERFAMILY Cyclin-like 238 353 IPR036915 -
Lcy13g2114 362 PIRSF Cyclin_A_B_D_E 1 355 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lcy13g2114 362 Pfam Cyclin, N-terminal domain 107 235 IPR006671 -
Lcy13g2114 362 CDD CYCLIN_AtCycA-like_rpt2 238 342 - -
Lcy13g2114 362 FunFam Mitotic cyclin 6 123 223 - -
Lcy13g2114 362 SMART cyclin_7 242 320 IPR013763 -
Lcy13g2114 362 SMART cyclin_7 145 229 IPR013763 -
Lcy13g2114 362 SUPERFAMILY Cyclin-like 96 235 IPR036915 -
Lcy13g2114 362 Pfam Cyclin, C-terminal domain 240 350 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2114 Lcy-Chr13:40077248 Lcy3g2082 Lcy-Chr3:47773646 1.04E-87 dispersed
Lcy13g2114 Lcy-Chr13:40077248 Lcy4g0192 Lcy-Chr4:2429697 8.98E-94 wgd
Lcy13g2114 Lcy-Chr13:40077248 Lcy9g2059 Lcy-Chr9:45380665 1.72E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2114 K06627 - csv:101206145 647.891