Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2114 ATGGCCGAGACTGAGAACTGTGTCCGTGTCACTCGTGCTTCTAAGAAGAGAGCTGCGGCGGCTGCCATGGTCGAGGATCAACCCGCGAATAAGAAGCGGGTGGTTCTCGGAGAGCTTCCGAACGTTCAGAATGTTTCTGGGTCACTGCCACAGAAGAGGAAGGCCAAGTCTCAGATGACCAAATGCAAGCCTAAAAAGAGGAGTAAGATTGGTGTTGCTCCAACGATCAAGACGACTGTTGTTGTTGAAGATAATGATCCCAAGTTGACAGTTGATGATCTTTTGGACGACCCAGAGATGAAGGGGCCTTATTCCTCGGATATTTATGCTTATCTTCGCAAGATGGAGGCGGAACCAAAAAGAAGGCCGATTCCTAATTACATAGAGAAGATTCAGACTGATGTAAGTGCCAATATGAGAGGAGTTTTGGTTGATTGGATGGTTGAGGTTGCAGAGGAATACAAGCTCGGTGCGGATACTCTGTATCTATCAATCTCTTACATCGATAGATTCCTATCAATGAACATCCTCAGTAGGCAAAGGCTTCAATTGTTGGGGGTTTCTTCAATGCTGATTGCCTCGAAATATGAAGAGATCACCCCTCCACATGTGGAAGATTTCTGTTATATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATCCTTAAATCCTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGCAAACACCAAATCTGCAGTTGGAATTTCTGGGTTATTACCTTGCTGAGCTTAGCTTGTTGGACTATAACTTTGTCAAGTTCTTGCCTTCTTTGATTGCTGCTTCAGTCGTTTTTCTTGCAAAATTTATCATCCGGCCAAAGCTGCATCCTTGGGGTTCAAACTTGCAACAATATACAGGCTACAAGCCAGCTGATTTGAGGCCTTGCGTCTTTCTGTTACATGATTTGTATATGGCTAGAAGAGGAGGGTCTCTGATAGCTGTGAGGGAAAAATACAAGCTACATAGGTTCAAATGTGTGGCAATGATGCCTTCACCTCCTGAGATACCATTTTCCTATTTTGAAGAAGCTTAG 1089 43.71 MAETENCVRVTRASKKRAAAAAMVEDQPANKKRVVLGELPNVQNVSGSLPQKRKAKSQMTKCKPKKRSKIGVAPTIKTTVVVEDNDPKLTVDDLLDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGADTLYLSISYIDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRQTPNLQLEFLGYYLAELSLLDYNFVKFLPSLIAASVVFLAKFIIRPKLHPWGSNLQQYTGYKPADLRPCVFLLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40077248 40079536 - Maker00025168 Lcy13g2114 652419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2114 362 SMART Cyclin_C_2 238 351 IPR004367 -
Lcy13g2114 362 ProSitePatterns Cyclins signature. 140 171 IPR048258 -
Lcy13g2114 362 FunFam Cyclin A1 225 347 - -
Lcy13g2114 362 MobiDBLite consensus disorder prediction 45 68 - -
Lcy13g2114 362 Gene3D - 107 347 - -
Lcy13g2114 362 Gene3D - 123 236 - -
Lcy13g2114 362 PANTHER CYCLINS 62 338 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy13g2114 362 SUPERFAMILY Cyclin-like 238 353 IPR036915 -
Lcy13g2114 362 PIRSF Cyclin_A_B_D_E 1 355 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lcy13g2114 362 Pfam Cyclin, N-terminal domain 107 235 IPR006671 -
Lcy13g2114 362 CDD CYCLIN_AtCycA-like_rpt2 238 342 - -
Lcy13g2114 362 FunFam Mitotic cyclin 6 123 223 - -
Lcy13g2114 362 SMART cyclin_7 242 320 IPR013763 -
Lcy13g2114 362 SMART cyclin_7 145 229 IPR013763 -
Lcy13g2114 362 SUPERFAMILY Cyclin-like 96 235 IPR036915 -
Lcy13g2114 362 Pfam Cyclin, C-terminal domain 240 350 IPR004367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2114 K06627 - - csv:101206145 647.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2114 Lcy-Chr13:40077248 Lcy3g2082 Lcy-Chr3:47773646 1.04E-87 dispersed
Lcy13g2114 Lcy-Chr13:40077248 Lcy4g0192 Lcy-Chr4:2429697 8.98E-94 wgd
Lcy13g2114 Lcy-Chr13:40077248 Lcy9g2059 Lcy-Chr9:45380665 1.72E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g693 . Blo12g00976 Bda01g00581 Bda03g00194 Bpe02g00444 Bpe04g00165 Bma04g00147 Bma01g02257 Cmo05g00159 Cmo12g00518 Cma01g01803 Cma09g00270 Car01g01408 Car12g00532 Sed10g1978 Cpe06g00185 Cpe07g00503 Bhi04g00390 Tan02g0995 Cmetu01g1482 . Hepe08g1310 . Lcy13g2114 Cla08g01600 Cam08g2100 Cec08g1681 Cco08g1812 Clacu08g1785 . Cre08g1567 . . Cone17ag0869 Cone20ag0217 Lsi04g01508 Csa04g02456 . Cme03g02080 . . . Bda01g01560 . Bpe05g00036 . Bma05g00047 . Cmo01g01859 Cmo09g00266 Cma12g00577 Cma05g00158 Car05g00137 Car09g00224 Cpe11g00133 Cpe02g00206 Bhi09g03262 . . . Hepe01g1808 . . Cla05g02086 Cam05g2238 Cec05g2258 Cco05g2298 Clacu05g2234 Cmu05g2098 Cre05g2223 Lsi08g01505 Csa02g01916 Chy07g00171 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy7g0583 . 48 346 Core Cell Cycle Gene Families AT3G48750 82.6 1.2e-144 510.0
Lcy9g2355 . 11 301 Core Cell Cycle Gene Families AT3G48750 51.3 3.8e-87 318.9
Lcy1g1650 . 1 349 Core Cell Cycle Gene Families AT3G54180 74.5 6.9e-148 520.8
Lcy9g2355 . 11 304 Core Cell Cycle Gene Families AT3G54180 63.5 5.2e-111 398.3
Lcy7g0583 . 48 341 Core Cell Cycle Gene Families AT3G54180 51.8 1.5e-86 317.0
Lcy1g1650 . 1 349 Core Cell Cycle Gene Families AT2G38620 63.0 1.8e-117 419.5
Lcy9g2355 . 11 304 Core Cell Cycle Gene Families AT2G38620 55.7 2.5e-87 319.3
Lcy9g2355 . 1 301 Core Cell Cycle Gene Families AT1G76540 81.4 3.2e-148 521.9
Lcy1g1650 . 1 343 Core Cell Cycle Gene Families AT1G76540 58.0 1.8e-111 399.8
Lcy7g0583 . 48 341 Core Cell Cycle Gene Families AT1G76540 51.7 3.7e-88 322.4
Lcy9g2355 . 8 301 Core Cell Cycle Gene Families AT1G20930 84.7 8.9e-151 530.4
Lcy1g1650 . 1 349 Core Cell Cycle Gene Families AT1G20930 58.3 1.5e-113 406.8
Lcy7g0583 . 48 341 Core Cell Cycle Gene Families AT1G20930 53.3 4.7e-91 332.0
Lcy5g1356 . 346 869 Core Cell Cycle Gene Families AT5G10270 55.5 1.2e-149 527.3
Lcy8g2188 . 1 306 Core Cell Cycle Gene Families AT5G10270 70.4 2.2e-119 426.8
Lcy11g1454 . 105 421 Core Cell Cycle Gene Families AT5G10270 53.5 8.2e-98 355.1
Lcy6g0602 . 120 436 Core Cell Cycle Gene Families AT5G10270 55.0 1.4e-97 354.4
Lcy2g1834 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.3 4.1e-97 352.8
Lcy5g2098 . 86 402 Core Cell Cycle Gene Families AT5G10270 53.5 2.6e-96 350.1
Lcy7g1603 . 221 448 Core Cell Cycle Gene Families AT5G10270 76.3 1.3e-95 347.8
Lcy8g1544 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.9 1.3e-95 347.8
Lcy8g1543 . 128 454 Core Cell Cycle Gene Families AT5G10270 50.7 1.9e-94 344.0
Lcy4g1937 . 101 423 Core Cell Cycle Gene Families AT5G10270 51.0 2.5e-94 343.6
Lcy9g0129 . 139 458 Core Cell Cycle Gene Families AT5G10270 52.5 4.2e-94 342.8
Lcy5g2517 . 121 439 Core Cell Cycle Gene Families AT5G10270 51.0 2.3e-92 337.0
Lcy7g1665 . 9 311 Core Cell Cycle Gene Families AT5G10270 52.5 2.8e-90 330.1
Lcy8g2186 . 156 431 Core Cell Cycle Gene Families AT5G10270 58.8 5.2e-76 282.7
Lcy7g1607 . 148 338 Core Cell Cycle Gene Families AT5G10270 69.1 2.9e-66 250.4
Lcy5g1356 . 416 867 Core Cell Cycle Gene Families AT5G64960 58.2 4.7e-132 468.8
Lcy8g2188 . 96 306 Core Cell Cycle Gene Families AT5G64960 76.8 1.8e-91 334.0
Lcy6g0602 . 174 436 Core Cell Cycle Gene Families AT5G64960 54.7 1.3e-81 301.2
Lcy8g1543 . 182 446 Core Cell Cycle Gene Families AT5G64960 53.6 2.2e-81 300.4
Lcy8g1544 . 196 458 Core Cell Cycle Gene Families AT5G64960 53.6 6.4e-81 298.9
Lcy11g1454 . 159 421 Core Cell Cycle Gene Families AT5G64960 52.5 8.3e-81 298.5
Lcy5g2098 . 140 402 Core Cell Cycle Gene Families AT5G64960 53.2 1.1e-80 298.1
Lcy2g1834 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 2.4e-80 297.0
Lcy7g1603 . 248 448 Core Cell Cycle Gene Families AT5G64960 74.1 9.2e-80 295.0
Lcy7g1665 . 49 311 Core Cell Cycle Gene Families AT5G64960 52.9 2.7e-79 293.5
Lcy9g0129 . 193 458 Core Cell Cycle Gene Families AT5G64960 53.0 6.6e-78 288.9
Lcy5g2517 . 175 439 Core Cell Cycle Gene Families AT5G64960 50.4 9.5e-77 285.0
Lcy8g2186 . 156 429 Core Cell Cycle Gene Families AT5G64960 58.7 7.8e-71 265.4
Lcy7g1607 . 175 338 Core Cell Cycle Gene Families AT5G64960 65.2 6.9e-51 199.1
Lcy2g0403 . 4 437 Core Cell Cycle Gene Families AT1G73690 70.5 1.8e-169 592.8
Lcy2g0403 . 12 365 Core Cell Cycle Gene Families AT1G66750 73.2 9.5e-154 540.4
Lcy2g0403 . 8 438 Core Cell Cycle Gene Families AT1G18040 71.7 2.8e-170 595.5
Lcy1g2133 . 33 315 Core Cell Cycle Gene Families AT5G63610 80.5 5.2e-139 491.9
Lcy4g2175 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.0 1.6e-172 603.2
Lcy10g1245 . 5 497 Core Cell Cycle Gene Families AT1G44110 59.9 1.0e-150 530.8
Lcy3g2082 . 226 504 Core Cell Cycle Gene Families AT1G44110 55.2 3.2e-88 323.2
Lcy9g1815 . 206 473 Core Cell Cycle Gene Families AT1G44110 57.8 5.4e-88 322.4
Lcy9g2059 . 113 382 Core Cell Cycle Gene Families AT1G44110 51.1 6.0e-79 292.4
Lcy9g1815 . 206 473 Core Cell Cycle Gene Families AT1G77390 54.1 2.2e-78 290.4
Lcy3g2082 . 225 500 Core Cell Cycle Gene Families AT1G77390 51.8 6.3e-78 288.9
Lcy9g2059 . 118 375 Core Cell Cycle Gene Families AT1G77390 50.4 1.3e-70 264.6
Lcy9g1815 . 16 484 Core Cell Cycle Gene Families AT5G25380 54.3 5.1e-120 428.7
Lcy3g2082 . 224 504 Core Cell Cycle Gene Families AT5G25380 64.1 4.5e-100 362.5
Lcy10g1245 . 217 490 Core Cell Cycle Gene Families AT5G25380 53.5 7.5e-79 292.0
Lcy9g2059 . 118 376 Core Cell Cycle Gene Families AT5G25380 50.9 5.2e-72 269.2
Lcy9g1815 . 44 422 Core Cell Cycle Gene Families AT5G11300 53.8 1.4e-95 347.4
Lcy10g1245 . 217 436 Core Cell Cycle Gene Families AT5G11300 55.5 2.8e-67 253.4
Lcy9g2059 . 113 319 Core Cell Cycle Gene Families AT5G11300 53.5 1.5e-57 221.1
Lcy13g2114 . 91 299 Core Cell Cycle Gene Families AT5G11300 50.7 3.2e-55 213.4
Lcy3g2082 . 190 504 Core Cell Cycle Gene Families AT1G15570 65.3 3.7e-118 422.5
Lcy10g1245 . 218 494 Core Cell Cycle Gene Families AT1G15570 53.2 6.5e-78 288.9
Lcy3g2082 . 4 504 Core Cell Cycle Gene Families AT1G80370 50.6 5.0e-118 422.2
Lcy9g1815 . 17 484 Core Cell Cycle Gene Families AT1G80370 50.2 5.2e-107 385.6
Lcy10g1245 . 218 495 Core Cell Cycle Gene Families AT1G80370 54.1 4.6e-79 292.7
Lcy9g2059 . 113 371 Core Cell Cycle Gene Families AT1G80370 51.3 1.7e-73 274.2
Lcy13g2114 . 3 361 Core Cell Cycle Gene Families AT5G43080 58.1 1.2e-111 400.6
Lcy9g2059 . 23 386 Core Cell Cycle Gene Families AT5G43080 56.1 2.7e-108 389.4
Lcy9g1815 . 208 474 Core Cell Cycle Gene Families AT5G43080 54.7 3.5e-79 292.7
Lcy10g1245 . 219 497 Core Cell Cycle Gene Families AT5G43080 51.8 1.3e-78 290.8
Lcy3g2082 . 227 505 Core Cell Cycle Gene Families AT5G43080 51.1 1.8e-75 280.4
Lcy13g2114 . 1 361 Core Cell Cycle Gene Families AT1G47210 57.8 2.0e-117 419.9
Lcy9g2059 . 23 386 Core Cell Cycle Gene Families AT1G47210 54.1 7.6e-109 391.3
Lcy3g2082 . 227 505 Core Cell Cycle Gene Families AT1G47210 51.1 2.2e-76 283.5
Lcy9g1815 . 208 474 Core Cell Cycle Gene Families AT1G47210 52.4 3.8e-76 282.7
Lcy4g0192 . 177 450 Core Cell Cycle Gene Families AT1G47210 52.4 6.5e-76 282.0
Lcy9g2059 . 113 383 Core Cell Cycle Gene Families AT1G47220 57.7 5.9e-89 325.1
Lcy13g2114 . 91 361 Core Cell Cycle Gene Families AT1G47220 56.6 5.2e-85 312.0
Lcy9g1815 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.3 1.1e-71 267.7
Lcy13g2114 . 1 361 Core Cell Cycle Gene Families AT1G47230 55.6 9.6e-112 401.0
Lcy9g2059 . 23 385 Core Cell Cycle Gene Families AT1G47230 55.6 8.1e-111 397.9
Lcy4g0192 . 159 450 Core Cell Cycle Gene Families AT1G47230 52.4 9.1e-78 288.1
Lcy10g1245 . 220 499 Core Cell Cycle Gene Families AT1G47230 51.1 3.8e-76 282.7
Lcy3g2082 . 229 499 Core Cell Cycle Gene Families AT1G47230 52.0 2.3e-73 273.5
Lcy9g1815 . 209 474 Core Cell Cycle Gene Families AT1G47230 51.3 1.3e-71 267.7
Lcy1g1775 . 1 450 Core Cell Cycle Gene Families AT4G37490 55.6 1.0e-117 421.0
Lcy1g1775 . 1 347 Core Cell Cycle Gene Families AT5G06150 54.0 5.0e-83 305.4
Lcy1g0554 . 169 343 Core Cell Cycle Gene Families AT5G06150 53.1 1.7e-43 174.1
Lcy1g1775 . 1 407 Core Cell Cycle Gene Families AT3G11520 57.4 2.5e-107 386.3
Lcy1g0554 . 170 395 Core Cell Cycle Gene Families AT3G11520 52.2 8.0e-61 231.9
Lcy1g1775 . 94 443 Core Cell Cycle Gene Families AT2G26760 55.2 2.6e-99 359.8
Lcy8g2036 . 80 479 Core Cell Cycle Gene Families AT2G26760 51.6 3.7e-98 355.9
Lcy1g0554 . 24 438 Core Cell Cycle Gene Families AT2G17620 61.7 5.9e-129 458.4
Lcy9g2319 . 37 435 Core Cell Cycle Gene Families AT2G17620 53.4 6.3e-107 385.2
Lcy1g0554 . 5 395 Core Cell Cycle Gene Families AT4G35620 58.4 2.8e-106 382.9
Lcy9g2319 . 37 392 Core Cell Cycle Gene Families AT4G35620 53.0 2.6e-88 323.2
Lcy9g2319 . 1 435 Core Cell Cycle Gene Families AT1G20610 64.6 3.4e-145 512.3
Lcy1g0554 . 1 438 Core Cell Cycle Gene Families AT1G20610 56.8 3.1e-122 436.0
Lcy9g2319 . 1 332 Core Cell Cycle Gene Families AT1G76310 64.1 8.8e-104 374.4
Lcy1g0554 . 1 335 Core Cell Cycle Gene Families AT1G76310 52.2 1.1e-77 287.7
Lcy8g2036 . 203 372 Core Cell Cycle Gene Families AT1G76310 52.9 3.6e-41 166.4
Lcy1g1775 . 178 343 Core Cell Cycle Gene Families AT1G76310 52.4 1.8e-40 164.1
Lcy7g0207 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.6 1.2e-105 380.6
Lcy6g0441 . 46 243 Core Cell Cycle Gene Families AT1G70210 50.5 6.2e-49 192.2
Lcy1g0824 . 40 333 Core Cell Cycle Gene Families AT2G22490 54.1 3.8e-81 299.3
Lcy13g2102 . 43 318 Core Cell Cycle Gene Families AT4G34160 51.2 9.2e-70 261.5
Lcy1g0824 . 58 277 Core Cell Cycle Gene Families AT5G65420 58.6 3.7e-68 255.8
Lcy13g1500 . 69 268 Core Cell Cycle Gene Families AT5G65420 55.9 2.8e-60 229.6
Lcy1g0824 . 53 232 Core Cell Cycle Gene Families AT5G10440 58.0 6.5e-55 211.5
Lcy13g1500 . 64 242 Core Cell Cycle Gene Families AT5G10440 53.3 8.2e-50 194.5
Lcy5g1020 . 1 88 Core Cell Cycle Gene Families AT2G27960 94.3 2.4e-45 178.3
Lcy8g1946 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 2.9e-43 171.4
Lcy5g1020 . 1 83 Core Cell Cycle Gene Families AT2G27970 86.7 3.8e-40 161.0
Lcy8g1946 . 1 76 Core Cell Cycle Gene Families AT2G27970 93.4 1.1e-39 159.5
Lcy7g0716 . 243 1182 Core Cell Cycle Gene Families AT3G12280 73.8 0.0e+00 1335.1
Lcy3g1710 . 14 482 Core Cell Cycle Gene Families AT1G02970 60.4 4.5e-157 552.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001075 3 10 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 4 2 2 2 2 3 3 1 81