Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2126 ATGGCTGGCCTACTTCGGCCATGGATGAAGGACGAATCAGGCGGAACCGGGGCGGCTGGAGGCTGCAGAGACCGAGCGAAGTTGGTGGGACTCGGCCGAGGCCGAGCAGGGGGGTCGGGCAAAGTGCCCGACCCCTTATGTCTTGACCCGTCCCATTTGCCGGTTTCGCTTCTGGGGTCCATCTCTCAGCCCTATTTCTGCCCGGTTGTCCTCGTCATCCCCTTGTACCCGGAGTGGGGCGGCTCGCGGCTGGTTGGTAGCACTCTGCTTCAGATTTATTCGTCCCGCCACCGCACCGTTCCTCTCTGCGATTACTTGCCGATCAAGCTCCGCTTCTCTCCCACTCTTTCACCCATGTCCAGGTCTCGAGTTTACGCCGACGTCAATGTCCACCGCCCCAGAGATTACTGGGATTACGAATCTCTCGCCGTCCAATGGAGGGTTCGATTTGCTAGTTGGGGTCGTTTAATTTTAGCCTCTTGCCTAGTTTTGTTTATTTGCGAGATATGTCTTGTGGATCGTGGTCTGGCGTTCGACCCGTGCGTCATTGACGTTGTTTTGGACCGAGAGGGGGATTGGCTTGGACTGTTGCCCGAGGAGGAGCCTTTGTATATATTCTACAGTTCAGTCATCTGTAGGTTTTTTGAAATAGCTGACGTCCAAGTGCTTCATATCAAGAGGGAGATAAAAATATTACAGAATCTTTGTGGCGGCCCAAATATTGTGAAACTGCTGGACATTGTCAGAGATCAGCACTCAAAAACTCCTAGCTTAATCTTTGAATATGTGAACAGTACAGATTTCAAAATTTTGTATCCTACGCTGACTGATTATGATATACGCTACTATATATATGAGCTTTTGAAGGCATTAGATTACTGCCATTCACAGGGCATAATGCATAGAGATGTAAAACCTCACAATGTTATGATTGATCATGAACTGCGAAAACTTCGTTTGATTGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAAGAATACAATGTCCGAGTAGCATCTAGGTATTTCAAAGGGCCAGAACTTCTTGTAGATTTACAAGACTATGACTATTCCTTGGATATGTGGAGCCTGGGTTGTATGTTTGCTGGAATGATTTTCCGGAAGGAACCGTTCTTCTATGGCCATGACAATCATGACCAACTTGTTAAAATTGCCAAGGTATTTGTCCGTCTCTTTTTCAACATTGGTTGGCATAGCCGTAAGCCATGGTCAAGATTTATCAATGGCGATAATCAGCATCTTGTATCCCCCGAGGCCATTGATTTTCTGGATAAGCTTCTTCGATATGACCATCAAGATAGGCTCACTGCAAGAGAAGCAATGGCTCATCCATACTTCTTCCAGGTTAGAACTGCCGAGAACAGCAGGCTGCGAACGCAATAA 1407 47.33 MAGLLRPWMKDESGGTGAAGGCRDRAKLVGLGRGRAGGSGKVPDPLCLDPSHLPVSLLGSISQPYFCPVVLVIPLYPEWGGSRLVGSTLLQIYSSRHRTVPLCDYLPIKLRFSPTLSPMSRSRVYADVNVHRPRDYWDYESLAVQWRVRFASWGRLILASCLVLFICEICLVDRGLAFDPCVIDVVLDREGDWLGLLPEEEPLYIFYSSVICRFFEIADVQVLHIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKILYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVFVRLFFNIGWHSRKPWSRFINGDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFFQVRTAENSRLRTQ 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40162144 40169876 - Maker00025201 Lcy13g2126 652431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2126 468 FunFam Casein kinase II subunit alpha 209 262 - -
Lcy13g2126 468 SMART serkin_6 204 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2126 468 Gene3D Transferase(Phosphotransferase) domain 1 263 454 - -
Lcy13g2126 468 FunFam Casein kinase II subunit alpha 263 399 - -
Lcy13g2126 468 CDD STKc_CK2_alpha 225 454 IPR045216 GO:0004674(InterPro)|GO:0006468(InterPro)
Lcy13g2126 468 PANTHER CASEIN KINASE II SUBUNIT ALPHA 118 457 IPR045216 GO:0004674(InterPro)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0005956(PANTHER)|GO:0006468(InterPro)|GO:0018105(PANTHER)|GO:0018107(PANTHER)|GO:0051726(PANTHER)
Lcy13g2126 468 Gene3D Phosphorylase Kinase; domain 1 218 262 - -
Lcy13g2126 468 SUPERFAMILY Protein kinase-like (PK-like) 218 458 IPR011009 -
Lcy13g2126 468 ProSiteProfiles Protein kinase domain profile. 110 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2126 468 Pfam Protein kinase domain 224 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2126 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2126 K03097 - - vvi:100259500 498.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2126 Lcy-Chr13:40162144 Lcy1g0922 Lcy-Chr1:8043908 9.14E-157 dispersed
Lcy1g0930 Lcy-Chr1:8122567 Lcy13g2126 Lcy-Chr13:40162144 5.62E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g668 . . . . . . . . . Cmo12g00528 . . . Car12g00534 Sed14g1515 . Cpe07g00511 Bhi04g00405 Tan02g1754 Cmetu11g0428 . Hepe08g1323 . Lcy13g2126 Cla08g01612 Cam08g2113 Cec08g1699 Cco08g1822 Clacu08g1798 . Cre08g1581 . . . . . . . Cme03g02093 . . . . . . . . . . . Cma12g00590 . . . . . . . . . . . . . . . . . . . Lsi08g01516 Csa02g01904 Chy03g01582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0063141 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65591 None None None None Lcy PK