Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2131 ATGGGGACGGAGCATCCCGTCAATTTTACTTACATGGGGCGGACCTACGATGATCTCAGCAACGGCGACAGTTCTGGGGCTTTTAGCGACTGTAACAGCGATAGATCCGGGGAGTTTCCCACGGCCTCGTCGCAGAGCCGGCGCCTTTTGATTGCTTGTGCTTCCGATAACTCCGACGAGCTAATTCACCAGCTGGTGTTGGACCTCGAGTCCTGTTCGATCGAGGAGCAGAAGCAGGCGGCTATGGAGATCAGACTTCTCGCCAAAAACAAACCCGAGAATCGATTGAAGATCGCGAAAGCCGGAGCGGTGAGGCCGTTGATTTCGCTGATATCGTGTACGGATCCTCAGCTTCAAGAGTACGGCGTCACGGCGATTTTGAATCTCTCGCTGTGCGACGAGAACAAGGAGTTGATAGCGGCGTCCGGTGCGATTAAGCCTTTGGTTCGAGCGCTCATGTCCGGAACTCCGACGGCGAAGGAGAACGCCGCCTGTGCTTTACTGCGGCTATCGCAAATGGAGGAGAACAAGATAGCGATCGGACGGTGTGGAGCGATTCCGCTTCTGGTGAATCTATTGGAGAACGGCGGATTTCGCGGAAAGAAGGACGCATCCACGGCTCTGTATTCGCTGTGCTCGGTTAAGGAGAACAAAATCAGAGCGGTGAAAGCGGGAATCATGAGGCCGCTAGTGGAATTGATGGCGGATTTCGGGTCAAACATGGTGGACAAGTCGGCGTTCGTGTTGAGCGTGTTGGTATTGATGCCGGAGGCGAGGACGGCTCTGGTAGACGAAGGCGGAATTCCGGTACTGGTGGAATTAGTAGAAGACGGAACGCAACGGCAGAAGGAGATCGCGGCGGTGATTTTGCTGCAGATTTGTGAGGACAGCGTCCTTTACCGTACAATGGTGGCCCGTGAAGGAGCAATTCCGCCGCTAGTCGCCTTGACACAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAACTGATAGAGCTTCTACGGCAACCGAGATCCGGCAACTACGCTGCCACCACCTCAGATGTGTCAGTCTAA 1059 54.96 MGTEHPVNFTYMGRTYDDLSNGDSSGAFSDCNSDRSGEFPTASSQSRRLLIACASDNSDELIHQLVLDLESCSIEEQKQAAMEIRLLAKNKPENRLKIAKAGAVRPLISLISCTDPQLQEYGVTAILNLSLCDENKELIAASGAIKPLVRALMSGTPTAKENAACALLRLSQMEENKIAIGRCGAIPLLVNLLENGGFRGKKDASTALYSLCSVKENKIRAVKAGIMRPLVELMADFGSNMVDKSAFVLSVLVLMPEARTALVDEGGIPVLVELVEDGTQRQKEIAAVILLQICEDSVLYRTMVAREGAIPPLVALTQSGTNRAKQKAEKLIELLRQPRSGNYAATTSDVSV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40235170 40236911 - Maker00025424 Lcy13g2131 652436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2131 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 102 144 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 SUPERFAMILY ARM repeat 59 333 IPR016024 -
Lcy13g2131 352 SMART arm_5 297 337 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 SMART arm_5 173 213 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 SMART arm_5 214 254 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 SMART arm_5 91 131 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 SMART arm_5 132 172 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 SMART arm_5 255 295 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 FunFam RING-type E3 ubiquitin transferase 51 341 - -
Lcy13g2131 352 Pfam Armadillo/beta-catenin-like repeat 133 171 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 Pfam Armadillo/beta-catenin-like repeat 92 130 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 Pfam Armadillo/beta-catenin-like repeat 174 213 IPR000225 GO:0005515(InterPro)
Lcy13g2131 352 PANTHER U BOX DOMAIN-CONTAINING 57 337 - -
Lcy13g2131 352 Gene3D - 40 199 IPR011989 -
Lcy13g2131 352 Gene3D - 201 349 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2131 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2131 Lcy-Chr13:40235170 Lcy1g0491 Lcy-Chr1:4317658 3.71E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g651 . . . . . . . . Cmo05g00143 Cmo12g00537 . . . Car12g00540 Sed10g1203 . Cpe07g00515 Bhi04g00413 Tan02g1737 Cmetu03g0693 . Hepe08g1331 . Lcy13g2131 Cla08g01619 Cam08g2121 Cec08g1706 Cco08g1830 Clacu08g1806 . Cre08g1588 . . Cone17ag0886 Cone20ag0233 . . . Cme03g02100 . . . . . . . . . . . Cma12g00597 Cma05g00141 Car05g00123 . Cpe11g00122 . . . . . . . . . . . . . . . Lsi08g01525 Csa02g01897 Chy03g01589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009336 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34