Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2133 ATGAGGGCAAAGATGCTTGGAGAATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAATCAGCAGTTTGCAACTTTCCAATCACAAGGACATTGTCTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTCGAGTATGAGCCAAGCACATTGTGCCCTGAGAGTAGTCAAGGCGCATGTTGATTTGACAGAGGGGAGATATTTGTTATCTGGAGCATCAGATGCATCAGCTGCTGTGTTTGATATTCAACGTGCAACTCATTCCGAGGGTCTTATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGGCATAAATATGCAATATCCTCAGCCATATGGTATCCCATTGATACTGGATTGTTTGTCACCGGTTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAACTGCCAGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCACATATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTTCGCCTTTGTGATATTTCTTCTGGGGCATTTTCTCACACATTATCTGGACATCGTGATGGTGTAATGAGTGTAGAATGGTCAGCTTCTAGTGAGTGGGTTTTGATTACTGGCGGTTGTGATGGAGCAATACGTTTCTGGGACATCAGACGAGCTGGATGTTTTCGTGTTTTAGATCAGTCTCAATCCCAGCTTGGGAGACGACCACCTATCTCAGGATGGACTGCAAATAAGCTATCAACATCTAAGTCCCTCTTGGCCAGCCAAGGTTCAAATATGAAATCTCGTGTACCTCATAAGAAACTAGCCAATGGAAACGCAACAAAGCCATCATCTACAGGTAAACTGCCAGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTATCCAGTCAGGATCGAGCAGTCTCTCACTATGGTGCTGTCACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCCGATTCAAGGTTAAAGTTGTGGGATGTTGAATCCGGGTGTAATACACTCGTGAATTATGAAACCATGCGGTTACAGACCAATAAGCCATTGCAATTAGCCACATCCCAAGATTCAGCCCTTGTATTTGCTCCATGCATGACGACTGTTAAAGCATTTGATATGTGGACAGGGAAGACATCCCTGACATTCAGCGGCCATTATGAAGGCGTGAACTGTTGCTGGTATAATTTCCCGGATCAGGAACTGTACACCGGTGGCAACGATAGGCAAATTCTTGTCTGGTCACCATCTCGGAACTCTACCGAACTGTGGACACGCAGGATTGGGAATCAACGGCAGACAAGGATAACTGGAGCGACTGATTGTCATCGACAAAGAAGTTCGGTTTCGACACTGATTCCATCCATAAGACTCTGCTCACCATGTACATAA 1494 44.85 MRAKMLGECGRILEIEKRENSAQILSQIVLNPIESAVCNFPITRTLSLPIEVPSTHFRSSMSQAHCALRVVKAHVDLTEGRYLLSGASDASAAVFDIQRATHSEGLIAKHQCIFAVDKQHEHGHKYAISSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSLLASQGSNMKSRVPHKKLANGNATKPSSTGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPLQLATSQDSALVFAPCMTTVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGNDRQILVWSPSRNSTELWTRRIGNQRQTRITGATDCHRQRSSVSTLIPSIRLCSPCT 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40257716 40263493 - Maker00025223 Lcy13g2133 652438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2133 497 ProSitePatterns Trp-Asp (WD) repeats signature. 228 242 IPR019775 -
Lcy13g2133 497 FunFam Transducin/WD40 repeat-like superfamily protein 53 288 - -
Lcy13g2133 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 157 - -
Lcy13g2133 497 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Lcy13g2133 497 PRINTS G protein beta WD-40 repeat signature 141 155 IPR020472 -
Lcy13g2133 497 PRINTS G protein beta WD-40 repeat signature 228 242 IPR020472 -
Lcy13g2133 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 366 - -
Lcy13g2133 497 SMART WD40_4 201 241 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 SMART WD40_4 54 96 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 SMART WD40_4 410 449 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 SMART WD40_4 324 362 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 SMART WD40_4 109 154 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 449 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 Pfam WD domain, G-beta repeat 122 154 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 Pfam WD domain, G-beta repeat 204 241 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 Pfam WD domain, G-beta repeat 412 449 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 Pfam WD domain, G-beta repeat 332 362 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 73 455 IPR042238 GO:0000109(PANTHER)|GO:0000209(PANTHER)|GO:0006283(PANTHER)|GO:0006283(InterPro)|GO:0031464(PANTHER)|GO:0043161(PANTHER)
Lcy13g2133 497 FunFam Excision repair cross-complementation group 8 310 452 - -
Lcy13g2133 497 SUPERFAMILY WD40 repeat-like 79 453 IPR036322 GO:0005515(InterPro)
Lcy13g2133 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 163 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 Gene3D - 51 452 IPR015943 GO:0005515(InterPro)
Lcy13g2133 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 243 - -
Lcy13g2133 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 371 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 MobiDBLite consensus disorder prediction 298 312 - -
Lcy13g2133 497 ProSitePatterns Trp-Asp (WD) repeats signature. 349 363 IPR019775 -
Lcy13g2133 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 250 IPR001680 GO:0005515(InterPro)
Lcy13g2133 497 MobiDBLite consensus disorder prediction 280 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2133 K10570 - - csv:101209203 772.311
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36