Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2134 ATGCTGTGCGCTTGTTCGGGAGAGCAATTTAAGTTCGAAGAGCCACCGCAGTCCCCAGAGTCACTTGCTACGAGGGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTAAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTGAACTACGAGGAAGCCAGAGCTTTGCTGGGGAGGCTTGAGTATCAAAGAGGAAATTTTGATGCTGCCCTACAGGTATTTCAGGGTATAGACATTAGATCTTTAACGCCAAGAATGGTTAAGGCAATCGCTGGAAAGATAAGGGAGGAAAAGCCTCGTCCTAAAGGTGACAGTGCACCCCCTAGTGGTGGAATGTCCATGCATTCTGTTAGTCTACTACTTGAAGCAATTTTACTCAAGGCAAAATCACTGGAGGAACTTGGCAGATATATAGAGTCTGCAAAAGAGTGCAGGATAATACTTGATACAGTGGAATCAGCTTTGCCTAATGGAATGCCCGAGTGTATTGGTGAAGACTGCAAGTTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTACCTACTTTGTGGATTAAAGGAGGGTATCTTGACGAGGCAATAAATGCCTATCGCCGGGTCCTTGTTAAACCATGGAATTTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGCACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCTCTTAAGTTTCATGTATTCGGTCCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTTTGTTGCTAATACTCATGAAGAAGGTGGTGATGCAGGAAATAAGCTGGGATCCAGAGATTATGAATCATCTGACTTATGCACTTTCTATCACTAGACAATTTGAATTACTTGCTGAGCATGTGGAGCAGATCCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTTTGTTACAATGCAGCAGGACAGAATGAAGCAGCTTTGAACCTTCTAACGAAGGTTTGCGGTTCCTCTGAAGTAAAGCACGAGCCCCATTTTCATTCTTTTTTGTTGCTTGCAAAATTGTGTTCAGAGGATTCAAAATACGCATGTGATGGAATTAAATTTGCTCGTAGAATGATCGATATGGCCAGTGAACAAAGTAAACATTTCAATTCTGAAGCCCACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCTAGAGCTTCTGTATCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCCCTACGAGTTTCTTCTCTCACTGGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCCGTGCAGAGAAATCTCGATGTCGCCTTCTACAGTGCAATGGCATACTCAAATATGGTGGCTGATGGTTCCGGGAGAGGTTGGAAGCTTTTGACCCTCATACTTTCAGCTGAGAGGCGACTCAAGGACGCTGAAACCATAGTTGATTTTGCTTTGGATGAAGCGGAGAGGATGGATCAACTGGATTTTCTTCGATTGAAAGCTGTACTCAAAGTTACTCAGGAACAGCCAAAGCAAGCAATAGAAGCTTACAGAGTCTTGCTAGCTCTAATTCAAGCACGAGAAGAACTTCAGCTTCAGGCTAAGAACTTTGACCAATCCAAGGACTTGGAACTTGAGGCAGCGGGAGAACGTAACTTGGAACGAGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCCTGGGGGGATGCAGAGATTTGCCTGAATAAAGCCAAGTCATTAGATGTTCATTGCCCCAGAGGTTGGCATGCAACAGGCAAGTATTTTGAAGCTCGCTCATTACACAAGGAAGCCCTTGTTTCATTCTCAGTCTCTCTATCAATAGATCCTGATTATGTTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATGCAGTACTCAATCACTTCCGATTGCACGCAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGACTGCTCTCCAAAATGGAAGGACTGTTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCTGCTCCTCCTCAGAGTTTCGTCTAA 2151 43.24 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMVKAIAGKIREEKPRPKGDSAPPSGGMSMHSVSLLLEAILLKAKSLEELGRYIESAKECRIILDTVESALPNGMPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILMKKVVMQEISWDPEIMNHLTYALSITRQFELLAEHVEQILPGIYSRAERWYFLALCYNAAGQNEAALNLLTKVCGSSEVKHEPHFHSFLLLAKLCSEDSKYACDGIKFARRMIDMASEQSKHFNSEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLTGRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAERRLKDAETIVDFALDEAERMDQLDFLRLKAVLKVTQEQPKQAIEAYRVLLALIQAREELQLQAKNFDQSKDLELEAAGERNLERAAWQDLAAIYSKLASWGDAEICLNKAKSLDVHCPRGWHATGKYFEARSLHKEALVSFSVSLSIDPDYVPSIISTAEVLMKCSTQSLPIARSLLMNAVRLDPTSHEAWFNLGLLSKMEGLLLQAADFFQAAHELQLSAPPQSFV 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40265217 40270309 + Maker00025440 Lcy13g2134 652439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2134 716 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Lcy13g2134 716 MobiDBLite consensus disorder prediction 106 125 - -
Lcy13g2134 716 SMART tpr_5 677 710 IPR019734 GO:0005515(InterPro)
Lcy13g2134 716 SMART tpr_5 573 606 IPR019734 GO:0005515(InterPro)
Lcy13g2134 716 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Lcy13g2134 716 SMART tpr_5 607 640 IPR019734 GO:0005515(InterPro)
Lcy13g2134 716 Coils Coil 485 505 - -
Lcy13g2134 716 Pfam Tetratricopeptide repeat 53 90 - -
Lcy13g2134 716 Gene3D Tetratricopeptide repeat domain 29 243 IPR011990 GO:0005515(InterPro)
Lcy13g2134 716 Gene3D Tetratricopeptide repeat domain 258 542 IPR011990 GO:0005515(InterPro)
Lcy13g2134 716 Gene3D Tetratricopeptide repeat domain 543 710 IPR011990 GO:0005515(InterPro)
Lcy13g2134 716 SUPERFAMILY TPR-like 513 707 IPR011990 GO:0005515(InterPro)
Lcy13g2134 716 SUPERFAMILY TPR-like 46 342 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g2097 Lcy-Chr12:42276303 Lcy13g2134 Lcy-Chr13:40265217 2.53E-169 dispersed
Lcy13g2134 Lcy-Chr13:40265217 Lcy9g1466 Lcy-Chr9:39707058 1.30E-145 dispersed
Lcy13g2134 Lcy-Chr13:40265217 Lcy11g1685 Lcy-Chr11:40706887 1.01E-182 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2134 K21843 - csv:101209448 1291.95