Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2139 ATGTTGCCCCCTTGCATCGTGTTCGTCGTTGATCCTATATCTCTTCGCAATTTTGGAGTCTTGAGTCAGGGAGTAGTAACAATGGCGCCGAGGGAGGAGGAGGACTCGAGGATGCAGAAGCTCGAATCAGCATGTTCGGATTTGAAAATCCTCCTTCAAGCCTCGGCGGAATTGAATGAAAGCTTGGAGAGGATGGAGAAGAGCCTTGATTCAATCGACGAATCGCTTGCAACGGCATCGAGAAGCATAATACCTCTACAATCTTTGGCGATGACGACAAAAGCTCTCGAAACGAGAATCAATCGGGCAGCTTCGCCTGCTCTCGTTCTCCTCGATTCTTTTAAGCGATCCGAGTTTCTCCAACGCAAGATTCTCGCGATCTTTGCCAATTTATCAGTGGAAAAATCGCCACACGAACGCTTGAAGAAGATAATCAAACTAGTCAACTGTGTGGATAGGCTCAATGCATCCATAAGCTTGATTAGCGAAGAGGGCGAATCGGTGATCCAGAAACTTCAAGAGGTGGTGGAGTTCTTGAGCAGGACGAAGGCTGCTGATCCACAGCGGACACACAGACTCAAAGAGACGATGATCACTCTCAAAGCTCTGTATGAAACAGAAATTGATGACATGAAGTTTGAGGGATTGCTTGACGAATCCCTGCTGAGTCTGCAAGATGAATTTGAAAACATACTAAAAAATTTAAAGCATCAAAGAAAACCGAAGTTTCAAGATGTCGAAGGAGAAAAAGAAGGTGAAGCAGTGGGGTCTGAGATGGGAAGCGAGTTGGAGATTGAAGCTGCTAAACGAATTTCTGAAACTCTTGCTGCCAATGATTGTTTGGATATTTGCATCAACATTTACGTCAAGGTTAGATACAGAAGAGCAGCTACAGCATTGATGCGACTCAATCCAGTCTATCTCAAAACATATACTCCAGAAGAAATTGACAAGATGGAGTGGGAAAAATTGGAGACGGCAATTTCTCTGTGGATTGAACACTTCAAGGTCGCAGCGACCAGCGTGTTGGTTTCCGAGAAGAGACTATGTAGCCAGGTTTTGGGCTCAATCATGGACGGACTGATGTGGCCTGAATGCTTCGTGAAGATCGCGGACAAAATCATGGCCGTCTTCTTCCGGTTTGGGGAAGGCGTTGCCAGGAGCACCAAAGAGCCGCAGAAGCTGTTCAAGCTCTTGGACATGTTCGACTCCATGGAAAAACTCAACTCCGAATTCTCCGAGGCATTCGACGGCGAATCCGGCACCGAAATCCGTACACGATACAGAGAGCTCGAGAAGCTACTCGTGCACGCATCCAGCAAAGTCTTTTGGGATTTCGGCCTCCAAATCGAGGGCAATGCAGACGGATTTCCTCCTCCAAAAGACGGCTCAGTTCCGAAACTAGTCAGATACGCCGTCAACTACCTCAAGTACCTTGCAAGCGACAACTACAGTTCCGCCATGGCCAAAGTCCTCCAAATACAGAAATCATGGAAAATCGGATTCCTCTCAAAATCAGAAGCCGACGAGAATTTGCTCAAAGACGCCTTCTCCAACGTAATGGAAGCTCTACAAAGAAATGTCGAATCCAAAAAATCGCGCTACAGAGACAAAATCCTACCGCATATCTTCTCAATGAACACATACTGGTACATCTACATGCGAATCCGAAACACGGAACTAGGAAGATTGCTAGGAGAACAGTATATGAGAAAGAACTACAAAGCAGTGGCAGAAGAATCGGCTTACACGTACCAAATGCTATGTTGGGAGCCTCTGCTTTCGGTAATGGACATGGAAGACGTGCGATTACAGAACATGGAAACCGTCGAAGATTTGGCGAAGACAAAAATGGAAGCATTCGTGAAGGCTCTGAGGGAATTTTCACAGAAACACAGAGCGTCATATTCCATTCCGGATTTGGATTTGCGGGAGCAGTTGAAAGAGGCGACTCTGAAGATGATACTACCGGCTTACACGGAGTTTTTCAATTTGCACTCGGCTTTGTTGCCGGGAATTGGGAAGTATTATGTGGGCCTGGAAACGATCCATGATTTTGTGGGCCGGGCCTTTGAGTTCGAAGGTGGAAGTGGGCCTGGGCCGGGTGGCAAGTTGAAGCGGCGGGGTTCGGTGGATAGGATGGCTGATGTGGCGTCCGATGGACCAATGATGGCCGTTGGATCGGAATAG 2190 47.21 MLPPCIVFVVDPISLRNFGVLSQGVVTMAPREEEDSRMQKLESACSDLKILLQASAELNESLERMEKSLDSIDESLATASRSIIPLQSLAMTTKALETRINRAASPALVLLDSFKRSEFLQRKILAIFANLSVEKSPHERLKKIIKLVNCVDRLNASISLISEEGESVIQKLQEVVEFLSRTKAADPQRTHRLKETMITLKALYETEIDDMKFEGLLDESLLSLQDEFENILKNLKHQRKPKFQDVEGEKEGEAVGSEMGSELEIEAAKRISETLAANDCLDICINIYVKVRYRRAATALMRLNPVYLKTYTPEEIDKMEWEKLETAISLWIEHFKVAATSVLVSEKRLCSQVLGSIMDGLMWPECFVKIADKIMAVFFRFGEGVARSTKEPQKLFKLLDMFDSMEKLNSEFSEAFDGESGTEIRTRYRELEKLLVHASSKVFWDFGLQIEGNADGFPPPKDGSVPKLVRYAVNYLKYLASDNYSSAMAKVLQIQKSWKIGFLSKSEADENLLKDAFSNVMEALQRNVESKKSRYRDKILPHIFSMNTYWYIYMRIRNTELGRLLGEQYMRKNYKAVAEESAYTYQMLCWEPLLSVMDMEDVRLQNMETVEDLAKTKMEAFVKALREFSQKHRASYSIPDLDLREQLKEATLKMILPAYTEFFNLHSALLPGIGKYYVGLETIHDFVGRAFEFEGGSGPGPGGKLKRRGSVDRMADVASDGPMMAVGSE 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40284631 40286946 - Maker00025330 Lcy13g2139 652444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2139 729 SUPERFAMILY Cullin repeat-like 191 676 IPR016159 -
Lcy13g2139 729 Gene3D Exocyst complex component Exo70 131 692 - -
Lcy13g2139 729 Pfam Exo70 exocyst complex subunit C-terminal 331 676 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy13g2139 729 Coils Coil 48 75 - -
Lcy13g2139 729 PANTHER EXOCYST COMPLEX PROTEIN EXO70 91 691 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy13g2139 729 MobiDBLite consensus disorder prediction 698 729 - -
Lcy13g2139 729 Coils Coil 514 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2139 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1355 Lcy-Chr13:31596450 Lcy13g2139 Lcy-Chr13:40284631 3.36E-68 dispersed
Lcy13g2139 Lcy-Chr13:40284631 Lcy5g2492 Lcy-Chr5:47732169 4.26E-32 dispersed
Lcy13g2139 Lcy-Chr13:40284631 Lcy2g0063 Lcy-Chr2:462483 1.01E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g641 . . . . . . . . Cmo05g00136 . . . . . Sed11g0918 . . Bhi04g00438 Tan02g1722 Cmetu03g1922 . . . Lcy13g2139 Cla08g01629 Cam08g2133 Cec08g1718 Cco08g1840 Clacu08g1819 . Cre08g1602 . . Cone17ag0891 Cone20ag0237 . . . Cme03g02110 . . . . . . . . . . . . Cma05g00132 Car05g00114 . . . . . . . . . . . . . . . . . Lsi08g01534 Csa02g01886 Chy03g01600 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011239 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 31