Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2144 ATGTTAGCGGACTTTCCGTCAATGAGGACAAGAAGAATCAGAAAGAGGGCAGAGTATGAGGACTCAGGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAACCTTCAGTAATTCTAATGATACTGGCTGCAAATGCAGCAGTAGGAGTGATTACGGAAACAAATGCTGAAAAGGCTCTCGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTTGTTTTTCAATACTTCCGGCTACTGATCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTAAGTAATCAGCTACGTGTTGATCAAGCAATTCTCACAGGCGAGGAGGATATGTATCACTTGTTGTGGGAGTGCCAGTTTGCTAATTATCTTTGGGACCGTTTGAGGAGTTCGTTTGGTGTTACTGGGCGCGTAATAGAGATGGGTGATTTTTGTTGGAGGAGGCCATTAGTACCAAAGAGATTCTCCAGAGACGCATGCCCTTTGCAACTCTATCTCCCGGATGATGTTCTCTCTGCAAAGCTGAAGATGAATCTCAAGATCACATTTTTATCCACTGTCCATTTGCTCAACATTTCTGGAACGATGATTTGGATGGTATTTGGCTTCTCCTGGGAATATCAAAGAATATCTCTGCACTATCTTTCTGGGGCATCCTTTCAAGAACAAGAAGTCCATTCTTTGGCTGAATATATCTAG 846 42.2 MLADFPSMRTRRIRKRAEYEDSGAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATDLVPGDIVEVAVGCKIPADMRMIEMLSNQLRVDQAILTGEEDMYHLLWECQFANYLWDRLRSSFGVTGRVIEMGDFCWRRPLVPKRFSRDACPLQLYLPDDVLSAKLKMNLKITFLSTVHLLNISGTMIWMVFGFSWEYQRISLHYLSGASFQEQEVHSLAEYI 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40319697 40328162 + Maker00025161 Lcy13g2144 652449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2144 281 Gene3D - 32 88 - -
Lcy13g2144 281 PANTHER CALCIUM-TRANSPORTING ATPASE 18 158 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Lcy13g2144 281 Pfam E1-E2 ATPase 99 159 - -
Lcy13g2144 281 Gene3D - 22 158 - -
Lcy13g2144 281 Pfam Cation transporter/ATPase, N-terminus 22 49 IPR004014 -
Lcy13g2144 281 SUPERFAMILY Calcium ATPase, transmembrane domain M 23 248 IPR023298 -
Lcy13g2144 281 SUPERFAMILY Calcium ATPase, transduction domain A 101 165 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2144 Lcy-Chr13:40319697 Lcy7g1517 Lcy-Chr7:26891703 4.57E-09 dispersed
Lcy13g2144 Lcy-Chr13:40319697 Lcy9g2037 Lcy-Chr9:45244753 1.80E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2144 K05853 - csv:101211345 244.588