Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2145 ATGTTGTATTGTATGTGTTTGCTGATGATGACAGGTGAGAGCTGCTCTGTTGAAAAAGAGCTCGAGTCCACAACAGCAGTAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGAACAGTGGTGGTTGCTGGCAGGGCGCGTGCTGTTGTGGTAGGGGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTCTATATTGCAAACAGATGATGAGGCGACACCATTGAAAAAGAAGCTAGATGAATTTGGAACTTTTCTGGCCAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCTCATGGTGGGGTTTTGAGTGGTGCAATACATTACTTCAAGCACAGAAGGTCTTTTAGGGCCGCTGTGTTCGTATCCTCCAACTCAACATCGAAGTGGTCTTGTGCACAGCCATATGTTCTTGGGTCTGAGCTACATGCGATTGCTGTTGCTCTTGCTGTTGCGGCCATTCCTGAAGGACTTCCTGCCGTTGTCACAACAATACCTCTCCTGTCCTTGGCCATGATGGCGAGGTGTTTGGCTCTTGGCACCAAACGAATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATCTGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCTGTGTCAAAGATTTGTGTGGTCCACTCTGTTTTGCATGGTCCACAACTTTCTGAGTACAGTGTCAGTGGTACAACATATGCTCCTGATGGTATTATTTTTGACAGCAGGGGACTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATCCTACACATGGCAATGGGCTCTGCCCTCTGCAACGAGTCTACTTTGCAATATAATCCAGACAAGGGGAGCTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTTCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCAATGCCTTCTGCTCTACATATGCTAAGCAAGCATGAGCGTGCATCCTATTGCAACCACCATTGGGAGAGCCAGTTCAAAAAGATTTCTGTATTGGAGTTTTCTCGTGATCGGAAGATGATGAGCATTTTATGTAGCAGAAACCAGTCACATATCCTATTCTCCAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGTATCCTTTGCAATGAAGATGGTTCCACTAGTGTTTTAACTTCTAGTATTCGTGCTGAAGTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCTGTGAGTCAGCAGAGTTTATCCTTTGATGATGAGCAAGACCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACCGCGGGCATACGTGTTATAGTTGTTACTGGGGATAATAAGTCAACTGCTGAATCACTATGCCGAAAGATTGGTGCCTTTGATCACTTGGTAGATCTAACTGGTCATTCTTTTACTGCTTCTGAATTTGAAGAGCTACCTGCAGTGCAACAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAGCCTTCTCATAAGAGAATGCTTGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGTGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCAGATATCGGAATTGCCATGGGTTCAGGAACAGCAGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAACAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATATTTGTGGCTGCTGTTCTTGGAATACCAGAGACTCTTGCCCCTGTACAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAATAAGCAAGACTCTGATGTAATGAAAGCCAAACCTCGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATTGGAGGTAGGGCAATGAATGACCTATTCTTGGTTTCTTCCATAGAATGTTTGTTGCTAGATATCTATGGCTCTAGTTTGGTATCTTTGTTAGCTAGAGCTAAATTCTCAGTGCATTCAAATTATATGCTGTTATCAGCCGGTAAAAAGTTTTTGAATGGTGGTATCATTGGTGCAGCTTATGTTGGTCTTGCAACAGTTGCTGGCTTCATATGGTGGTTTATATACTCTGACAGTGGTCCTAAGCTAACTTACACCGAGTTGATGAATTTTGATACTTGCTCAACAAGAGAGACAACATACCCATGCAGTATATTTGAGGATCGGCATCCATCGACTGTGTCTATGACTGTACTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATCTATGGCTCGTTGCCTCCATTGTCTTAACCATGATCCTTCACATGCTTATTATGTATGTGCGACCACTCGCAGTTCTTTTCTCTGTTATAATTATTGATGAGGTACTAAAGTTCTTTTCGCGACGCTCTACTGGCAGGTTGAGGCTTCCATTCAGATTCAGAAGGCATGATTTACTTCCAAAGAAGGAATTACATGACAAGTAG 2757 42.69 MLYCMCLLMMTGESCSVEKELESTTAVNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGNIRDSILQTDDEATPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKHRRSFRAAVFVSSNSTSKWSCAQPYVLGSELHAIAVALAVAAIPEGLPAVVTTIPLLSLAMMARCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYSVSGTTYAPDGIIFDSRGLQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALHMLSKHERASYCNHHWESQFKKISVLEFSRDRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTSSIRAEVEARFQSFAGNEMLRCLAIAFKLLPVSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSFTASEFEELPAVQQTMALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGGRAMNDLFLVSSIECLLLDIYGSSLVSLLARAKFSVHSNYMLLSAGKKFLNGGIIGAAYVGLATVAGFIWWFIYSDSGPKLTYTELMNFDTCSTRETTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVLTMILHMLIMYVRPLAVLFSVIIIDEVLKFFSRRSTGRLRLPFRFRRHDLLPKKELHDK 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40328862 40344850 + Maker00025125 Lcy13g2145 652450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2145 918 SFLD p-type atpase 203 620 IPR044492 -
Lcy13g2145 918 SUPERFAMILY Calcium ATPase, transmembrane domain M 70 894 IPR023298 -
Lcy13g2145 918 PRINTS H+-transporting ATPase (proton pump) signature 540 556 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g2145 918 PRINTS H+-transporting ATPase (proton pump) signature 599 624 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g2145 918 PRINTS H+-transporting ATPase (proton pump) signature 568 584 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g2145 918 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 229 466 IPR023299 GO:0000166(InterPro)
Lcy13g2145 918 PRINTS P-type cation-transporting ATPase superfamily signature 6 20 - -
Lcy13g2145 918 PRINTS P-type cation-transporting ATPase superfamily signature 591 603 - -
Lcy13g2145 918 PRINTS P-type cation-transporting ATPase superfamily signature 222 236 - -
Lcy13g2145 918 PRINTS P-type cation-transporting ATPase superfamily signature 462 473 - -
Lcy13g2145 918 PRINTS P-type cation-transporting ATPase superfamily signature 568 587 - -
Lcy13g2145 918 PRINTS P-type cation-transporting ATPase superfamily signature 484 494 - -
Lcy13g2145 918 FunFam Sodium/potassium-transporting ATPase subunit alpha 461 607 - -
Lcy13g2145 918 SUPERFAMILY Calcium ATPase, transduction domain A 9 68 IPR008250 -
Lcy13g2145 918 Gene3D - 585 736 - -
Lcy13g2145 918 ProSitePatterns E1-E2 ATPases phosphorylation site. 224 230 IPR018303 -
Lcy13g2145 918 SUPERFAMILY HAD-like 455 616 IPR036412 -
Lcy13g2145 918 Gene3D - 21 226 - -
Lcy13g2145 918 Pfam haloacid dehalogenase-like hydrolase 459 582 - -
Lcy13g2145 918 Pfam Cation transporting ATPase, C-terminus 762 880 IPR006068 -
Lcy13g2145 918 Pfam Cation transporting ATPase, C-terminus 652 708 IPR006068 -
Lcy13g2145 918 Pfam Cation transport ATPase (P-type) 292 401 - -
Lcy13g2145 918 FunFam Calcium-transporting ATPase, putative 613 726 - -
Lcy13g2145 918 Gene3D - 232 467 IPR023299 GO:0000166(InterPro)
Lcy13g2145 918 Gene3D - 749 895 - -
Lcy13g2145 918 Gene3D - 468 584 IPR023214 -
Lcy13g2145 918 NCBIfam HAD-IC family P-type ATPase 538 656 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy13g2145 918 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 741 892 - -
Lcy13g2145 918 Pfam E1-E2 ATPase 9 190 - -
Lcy13g2145 918 SFLD C1.7: P-type atpase like 203 620 - -
Lcy13g2145 918 PANTHER CALCIUM-TRANSPORTING ATPASE 9 894 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Lcy13g2145 918 FunFam Calcium-transporting ATPase 232 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2145 Lcy-Chr13:40328862 Lcy3g1566 Lcy-Chr3:42718536 2.46E-73 dispersed
Lcy11g0222 Lcy-Chr11:2859135 Lcy13g2145 Lcy-Chr13:40328862 5.22E-188 transposed
Lcy1g0909 Lcy-Chr1:7934281 Lcy13g2145 Lcy-Chr13:40328862 4.83E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2145 K05853 - csv:101211345 1196.8