Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2147 ATGCCGATGTACCAGCCCTCTACTTGGAGACAAGGGGATCCCAAGCTCGTTGTGGGTTGCGGAGCGCAGATTCTAGATCTGGAAACTGTCGTCAAAGATGGGATTCTCGGCGGCGGCGGCGGCGGTGGGCTCATCTCCGGCGGTGGTGCTGAGAAATTGGATCTGAAGGAGATGATTGAGGAGCTGGAATCATCGATAGAGGTCCCATCGGTGTTCATTTGCCCAATTTCGCTCGAGCCGATGCAAGATCCAGTGACCCTTTGCTCCGGGCAGACCTACGAGCGGTCCAACATTCTGAAATGGTTTTCTTTAGGCCATTTAACTTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCACCAGTTGATTCACACCTGGTTTTTGCAGAAGTACTTGGCATTGAAGAAGAGATCAGAGGACGTTCAGGGCAGAGTTTTAGAGCTTTTGGATTCGTTGAAGAAGGTCAAGGGCCAAGCTAGGGTTCAGTCCCTTAAAGATCTCCGACATGTCGTCGCCACCCATTCCTCCGCCAAGAAAATGGTGGTCGAAAACGGCGGCGTCGAGCTAATCTCCTCTCTTTTGGGTTCTTTCACTTCTCACGCAGTTGGGTCCGAAGCCGTTGGGATCCTCGTCAATTTGGATCTCGATTCGGAGTTGAAGAAGAATCTGATTCAACCCACGAGAATGTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATCAATTGCACGAAATTCATCAAGATGTTGATTGAGGGCGACGATTTAAGAACAGAGAACGTTTCAAGTTTGAGTCTACTCGTCGGATTGTTGAGAATGGTGAAGGATCAGAGACACCCAAATGGAGTAACCGCCGGACTCAGTTTACTCCGAACGCTCTGTTCAAACGAATCAATCAGAAAGCAACTCGTAAGCATCGGCGCCGTCGCGAAACTCGGCGGCGCCCTCTCCGGTTTAAACGTCGATTGCTTGGAATCGGCGCTTTATATTCTCGATGTTTTGTCGTCCCTTCCAGAGGGGAGATTAGCGTTGAAAGATTGCGAAGATACGATTAGGAATTTGGTGAAATTGTTGATGAAAGTATCTGAGATTTGTACTCAATTTGCGTTGTCGATTTTGTGGGCGGTTTTCAAGCTAGCGCCGGAGGAATGTGCGGTGCTCGCGGTGGAGGCGGGATTGGCGGCGAAGCTGCTGCTTGTGATACAAAGTGGGTGCAATAAAGAGCTAAAACAGAGATCTTCTGAGCTATTGAAATTGTGTAGTCTAAATTACCCAGATTCTATCTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1359 48.34 MPMYQPSTWRQGDPKLVVGCGAQILDLETVVKDGILGGGGGGGLISGGGAEKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFLQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVATHSSAKKMVVENGGVELISSLLGSFTSHAVGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIETKINCTKFIKMLIEGDDLRTENVSSLSLLVGLLRMVKDQRHPNGVTAGLSLLRTLCSNESIRKQLVSIGAVAKLGGALSGLNVDCLESALYILDVLSSLPEGRLALKDCEDTIRNLVKLLMKVSEICTQFALSILWAVFKLAPEECAVLAVEAGLAAKLLLVIQSGCNKELKQRSSELLKLCSLNYPDSIFISKCKLTRTIQ 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40360378 40361736 + Maker00025222 Lcy13g2147 652452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2147 452 CDD RING-Ubox_PUB 69 121 IPR045210 -
Lcy13g2147 452 SUPERFAMILY RING/U-box 64 138 - -
Lcy13g2147 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 140 IPR013083 -
Lcy13g2147 452 PANTHER WDSAM1 PROTEIN 64 445 IPR045185 GO:0061630(InterPro)
Lcy13g2147 452 Pfam U-box domain 68 138 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy13g2147 452 SMART Ubox_2 71 134 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy13g2147 452 SUPERFAMILY ARM repeat 157 439 IPR016024 -
Lcy13g2147 452 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy13g2147 452 Gene3D - 141 449 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2147 Lcy-Chr13:40360378 Lcy6g0515 Lcy-Chr6:4812599 3.51E-34 dispersed
Lcy13g2147 Lcy-Chr13:40360378 Lcy9g2015 Lcy-Chr9:45011089 1.50E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2147 - - - 0.0