Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2154 ATGGACACCTCTCAAGGAACCAACGGTGTGGGATGCGACTGTGAGCATCCTACAGTCACAGGCAGGCAAGTGGCTGTACTGTACTGTGTGAAGAGACCCGATGGGGCTGAGTGTGGGCAGATATGTCCTGCCCTTCAAATCTATCCAAAATGTACTCTAGAAGAAGAAGGAGAAGAAGAGAAGATGAAGTCGATGAATGAAAACGAGAGTAACAATAATAATGGTTGGTTGGGATTCTCTCTTTCTCCCCAAATGAAAATGGAGGTTACTTCTTCTGATCCTCACCACCACCATGCTCATCCCTACAACAACCACCACCATTCTCACACTGCTCCCAATTCCTTCTACTTGTCTCCTCATTACAACAACAACAACAGCTCTGAAATTTTCTATGGGATTGCTGAAAATGCCCCTCTCCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCCCTCAAATCCGACGGCTCTCTCTGTATCATGGAAGCCCTCTCAAGATCCCAAACCGAAGGGATGGTGCCGAGTTCGTCACCGAAGCTTGAGGACTTTCTCGGCGGTGGTGCAACAATGGCAGGTCGAGGTTTTTTCAATCAAAATGCTGAATCCGAACCCGACAGGGAACATTCGCTTGACCTTCTTCACCGACCCATTAGACAGAATCAAGAACACCAACAGATTCTCATTCAAAATTCCCATCAGTACTACTCTGGGTTGGTTCCTTCTTCCATTGGAATGGGAACTTGCGATCCCCAGATTCTACCGGCGGATGACGACGAAATCCCTTGCCTTAGAAACTGGGTCTCTCGTTCCCACTACGCCCATAATACTCTCGAGCAGCATATCGGCGGTGCCGCTCTGGTGAATGACGGCGGCGGTGGCGGAGGCGGTGGCTCTGCCTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGCTTGTCCATGAGCCCAGGTTCTCAATCGAGCTCGTTTACTGCTTCCGGCCAGATCTCACCCACCGGAGGCGACGGCGCTGCCGTGGAAACTAAAAAAAGAGGCCCCGGAAAACTCTGCCAGAAACAGCCCGTTCACCGCAAGTCCATCGACACGTTTGGCCAAAGAACTTCCCAATATCGCGGCGTTACAAGGTTCCATTACTTCATAATTATGTCTAATCATTTTCTAATTAATGACATAAATTTTTTCTATGTGTTCATATATCTTTTTTTGGTGAATATCGTAGACATAGATGGACTGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAAAAAGAAGGACAAACCAGGAAAGGAAGACAAGTTTATTTTTTTCCTTTTAAATATAACAAAACTTGAACTTGATTATTTTAAATTTGAAGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTACGATCTAGCTGCCCTCAAGTACTGGGGACCCTCGACCCATATAAACTTTCCATTGGAGAATTATCAGACTGAACTGGAAGAAATGAAAAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGTTTTTCGAGGGGCGCTTCAGTATTCCGTGGAGTGACAAGACACCACCAACATGGAAGATGGCAGGCTAGAATCGGGAGAGTTGCTGGAAACAAAGATCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATTGCAGCAATCAAATTCCGCGGTGTAAATGCAGTCACCAACTTTGACATTTCCAGATACGATGTCGAGAGAATCATGGCCAGTAGTACCCTACTGGCAGGCGAGCTGGCCAGAAGGAACAAGGAGGTCGACCCGAGCAGCGATGCCGTCGTCGCCTACGACTCCTCGACCGCACCAAACAACAATGGCGGGATCGGGATAGGGATCGAAATGAATTCCAACGACAACGGCGCCAATGGGAATGGTACTGATTGGAAGATGGCATTATATCAGAATCCATCACATCAGCAACAGCAACAACAACAGGCAGCAGCTGCTGCTGCTTGTGTTGCTGAATCAATGGATCATCATCACAACAAGTCCATGCCCACGTCGGGAGGCTATCGTAACGCGTCGTTTTCGATGGCATTGCAGGACTTGATCGGGATCGAGTCCTTGAACTCTAATAGTCACGGCATTGAAGATGATGTGAGCAAACAAGTGACTCACTTTTCAAATTCGTCGTCGCTGGTGACGAGTTTGAGTAGCTCGAGGGAAGGCAGCCCCGACAAGACAAACGCATCAATGCCATTCGCAAAGCCAGCACCCCTGATGGCATCGAAGCTAATCGATGCAACGAGCGGGGTCGGGTCATGGTATCCGTCCCCACAGCAGCTGAGGCCAACAGCCATTTCCATGGCACATTTGCCTGTTTTTGCAGCTTGGAATGACACTTAA 2406 48.21 MDTSQGTNGVGCDCEHPTVTGRQVAVLYCVKRPDGAECGQICPALQIYPKCTLEEEGEEEKMKSMNENESNNNNGWLGFSLSPQMKMEVTSSDPHHHHAHPYNNHHHSHTAPNSFYLSPHYNNNNSSEIFYGIAENAPLHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGGATMAGRGFFNQNAESEPDREHSLDLLHRPIRQNQEHQQILIQNSHQYYSGLVPSSIGMGTCDPQILPADDDEIPCLRNWVSRSHYAHNTLEQHIGGAALVNDGGGGGGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGAAVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRFHYFIIMSNHFLINDINFFYVFIYLFLVNIVDIDGLGDMKLICGIIVAKKKDKPGKEDKFIFFLLNITKLELDYFKFEGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASSTLLAGELARRNKEVDPSSDAVVAYDSSTAPNNNGGIGIGIEMNSNDNGANGNGTDWKMALYQNPSHQQQQQQQAAAAAACVAESMDHHHNKSMPTSGGYRNASFSMALQDLIGIESLNSNSHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNASMPFAKPAPLMASKLIDATSGVGSWYPSPQQLRPTAISMAHLPVFAAWNDT 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40451160 40455639 + Maker00025317 Lcy13g2154 652459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2154 801 ProSiteProfiles AP2/ERF domain profile. 521 579 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2154 801 SUPERFAMILY DNA-binding domain 456 487 IPR016177 GO:0003677(InterPro)
Lcy13g2154 801 SMART rav1_2 521 585 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2154 801 SMART rav1_2 453 491 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2154 801 MobiDBLite consensus disorder prediction 317 353 - -
Lcy13g2154 801 MobiDBLite consensus disorder prediction 735 754 - -
Lcy13g2154 801 MobiDBLite consensus disorder prediction 317 333 - -
Lcy13g2154 801 CDD AP2 520 581 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2154 801 SUPERFAMILY DNA-binding domain 520 581 IPR016177 GO:0003677(InterPro)
Lcy13g2154 801 ProSiteProfiles AP2/ERF domain profile. 418 485 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2154 801 Pfam AP2 domain 520 571 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2154 801 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 211 659 - -
Lcy13g2154 801 FunFam AP2-like ethylene-responsive transcription factor 520 581 - -
Lcy13g2154 801 Gene3D AP2/ERF domain 521 581 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy13g2154 801 Gene3D AP2/ERF domain 452 487 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2154 Lcy-Chr13:40451160 Lcy4g1350 Lcy-Chr4:32415061 1.48E-75 dispersed
Lcy2g0205 Lcy-Chr2:1611567 Lcy13g2154 Lcy-Chr13:40451160 1.60E-64 transposed
Lcy1g0889 Lcy-Chr1:7703336 Lcy13g2154 Lcy-Chr13:40451160 7.04E-85 wgd
Lcy13g2154 Lcy-Chr13:40451160 Lcy9g2006 Lcy-Chr9:44947296 2.84E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19450 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2154 K09285 - csv:101212797 569.311