Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g2154 | ATGGACACCTCTCAAGGAACCAACGGTGTGGGATGCGACTGTGAGCATCCTACAGTCACAGGCAGGCAAGTGGCTGTACTGTACTGTGTGAAGAGACCCGATGGGGCTGAGTGTGGGCAGATATGTCCTGCCCTTCAAATCTATCCAAAATGTACTCTAGAAGAAGAAGGAGAAGAAGAGAAGATGAAGTCGATGAATGAAAACGAGAGTAACAATAATAATGGTTGGTTGGGATTCTCTCTTTCTCCCCAAATGAAAATGGAGGTTACTTCTTCTGATCCTCACCACCACCATGCTCATCCCTACAACAACCACCACCATTCTCACACTGCTCCCAATTCCTTCTACTTGTCTCCTCATTACAACAACAACAACAGCTCTGAAATTTTCTATGGGATTGCTGAAAATGCCCCTCTCCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCCCTCAAATCCGACGGCTCTCTCTGTATCATGGAAGCCCTCTCAAGATCCCAAACCGAAGGGATGGTGCCGAGTTCGTCACCGAAGCTTGAGGACTTTCTCGGCGGTGGTGCAACAATGGCAGGTCGAGGTTTTTTCAATCAAAATGCTGAATCCGAACCCGACAGGGAACATTCGCTTGACCTTCTTCACCGACCCATTAGACAGAATCAAGAACACCAACAGATTCTCATTCAAAATTCCCATCAGTACTACTCTGGGTTGGTTCCTTCTTCCATTGGAATGGGAACTTGCGATCCCCAGATTCTACCGGCGGATGACGACGAAATCCCTTGCCTTAGAAACTGGGTCTCTCGTTCCCACTACGCCCATAATACTCTCGAGCAGCATATCGGCGGTGCCGCTCTGGTGAATGACGGCGGCGGTGGCGGAGGCGGTGGCTCTGCCTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGCTTGTCCATGAGCCCAGGTTCTCAATCGAGCTCGTTTACTGCTTCCGGCCAGATCTCACCCACCGGAGGCGACGGCGCTGCCGTGGAAACTAAAAAAAGAGGCCCCGGAAAACTCTGCCAGAAACAGCCCGTTCACCGCAAGTCCATCGACACGTTTGGCCAAAGAACTTCCCAATATCGCGGCGTTACAAGGTTCCATTACTTCATAATTATGTCTAATCATTTTCTAATTAATGACATAAATTTTTTCTATGTGTTCATATATCTTTTTTTGGTGAATATCGTAGACATAGATGGACTGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAAAAAGAAGGACAAACCAGGAAAGGAAGACAAGTTTATTTTTTTCCTTTTAAATATAACAAAACTTGAACTTGATTATTTTAAATTTGAAGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTACGATCTAGCTGCCCTCAAGTACTGGGGACCCTCGACCCATATAAACTTTCCATTGGAGAATTATCAGACTGAACTGGAAGAAATGAAAAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGTTTTTCGAGGGGCGCTTCAGTATTCCGTGGAGTGACAAGACACCACCAACATGGAAGATGGCAGGCTAGAATCGGGAGAGTTGCTGGAAACAAAGATCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATTGCAGCAATCAAATTCCGCGGTGTAAATGCAGTCACCAACTTTGACATTTCCAGATACGATGTCGAGAGAATCATGGCCAGTAGTACCCTACTGGCAGGCGAGCTGGCCAGAAGGAACAAGGAGGTCGACCCGAGCAGCGATGCCGTCGTCGCCTACGACTCCTCGACCGCACCAAACAACAATGGCGGGATCGGGATAGGGATCGAAATGAATTCCAACGACAACGGCGCCAATGGGAATGGTACTGATTGGAAGATGGCATTATATCAGAATCCATCACATCAGCAACAGCAACAACAACAGGCAGCAGCTGCTGCTGCTTGTGTTGCTGAATCAATGGATCATCATCACAACAAGTCCATGCCCACGTCGGGAGGCTATCGTAACGCGTCGTTTTCGATGGCATTGCAGGACTTGATCGGGATCGAGTCCTTGAACTCTAATAGTCACGGCATTGAAGATGATGTGAGCAAACAAGTGACTCACTTTTCAAATTCGTCGTCGCTGGTGACGAGTTTGAGTAGCTCGAGGGAAGGCAGCCCCGACAAGACAAACGCATCAATGCCATTCGCAAAGCCAGCACCCCTGATGGCATCGAAGCTAATCGATGCAACGAGCGGGGTCGGGTCATGGTATCCGTCCCCACAGCAGCTGAGGCCAACAGCCATTTCCATGGCACATTTGCCTGTTTTTGCAGCTTGGAATGACACTTAA | 2406 | 48.21 | MDTSQGTNGVGCDCEHPTVTGRQVAVLYCVKRPDGAECGQICPALQIYPKCTLEEEGEEEKMKSMNENESNNNNGWLGFSLSPQMKMEVTSSDPHHHHAHPYNNHHHSHTAPNSFYLSPHYNNNNSSEIFYGIAENAPLHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGGATMAGRGFFNQNAESEPDREHSLDLLHRPIRQNQEHQQILIQNSHQYYSGLVPSSIGMGTCDPQILPADDDEIPCLRNWVSRSHYAHNTLEQHIGGAALVNDGGGGGGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGAAVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRFHYFIIMSNHFLINDINFFYVFIYLFLVNIVDIDGLGDMKLICGIIVAKKKDKPGKEDKFIFFLLNITKLELDYFKFEGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASSTLLAGELARRNKEVDPSSDAVVAYDSSTAPNNNGGIGIGIEMNSNDNGANGNGTDWKMALYQNPSHQQQQQQQAAAAAACVAESMDHHHNKSMPTSGGYRNASFSMALQDLIGIESLNSNSHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNASMPFAKPAPLMASKLIDATSGVGSWYPSPQQLRPTAISMAHLPVFAAWNDT | 801 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 40451160 | 40455639 | + | Maker00025317 | Lcy13g2154 | 652459 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g2154 | 801 | ProSiteProfiles | AP2/ERF domain profile. | 521 | 579 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2154 | 801 | SUPERFAMILY | DNA-binding domain | 456 | 487 | IPR016177 | GO:0003677(InterPro) | |
Lcy13g2154 | 801 | SMART | rav1_2 | 521 | 585 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2154 | 801 | SMART | rav1_2 | 453 | 491 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2154 | 801 | MobiDBLite | consensus disorder prediction | 317 | 353 | - | - | |
Lcy13g2154 | 801 | MobiDBLite | consensus disorder prediction | 735 | 754 | - | - | |
Lcy13g2154 | 801 | MobiDBLite | consensus disorder prediction | 317 | 333 | - | - | |
Lcy13g2154 | 801 | CDD | AP2 | 520 | 581 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2154 | 801 | SUPERFAMILY | DNA-binding domain | 520 | 581 | IPR016177 | GO:0003677(InterPro) | |
Lcy13g2154 | 801 | ProSiteProfiles | AP2/ERF domain profile. | 418 | 485 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2154 | 801 | Pfam | AP2 domain | 520 | 571 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2154 | 801 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 211 | 659 | - | - | |
Lcy13g2154 | 801 | FunFam | AP2-like ethylene-responsive transcription factor | 520 | 581 | - | - | |
Lcy13g2154 | 801 | Gene3D | AP2/ERF domain | 521 | 581 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy13g2154 | 801 | Gene3D | AP2/ERF domain | 452 | 487 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2154 | Lcy-Chr13:40451160 | Lcy4g1350 | Lcy-Chr4:32415061 | 1.48E-75 | dispersed | |
Lcy2g0205 | Lcy-Chr2:1611567 | Lcy13g2154 | Lcy-Chr13:40451160 | 1.60E-64 | transposed | |
Lcy1g0889 | Lcy-Chr1:7703336 | Lcy13g2154 | Lcy-Chr13:40451160 | 7.04E-85 | wgd | |
Lcy13g2154 | Lcy-Chr13:40451160 | Lcy9g2006 | Lcy-Chr9:44947296 | 2.84E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19450 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g2154 | K09285 | - | csv:101212797 | 569.311 |