Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2155 ATGGCTGGTTCTGTCATTGAATATGAATTCAACTGTTCTTATGGAATTAGCCCTCAGCCAATGTCTGAAAATAATGCTTCAGAAATGGCATTGGGTTCAGTGTCCATATTCAAATCTACTGTTGAAGCTGACAATTCCTTTTCATCTGGTTTTGGAGCTTCTGCAACAGTTCCTCTGGAGAGTGAGGGAGTGAAAACCACTTCCCACCTTCTTCATGATCCTTCAAGTTTGAGTTTTGATATGTTTGGAAGTGGGAACTTCTCAGAAATGGTGGGTTCTTTTGGCTTTGTAACTGAAGGTCACCAGAGCCAGATCGCTACTATTAAGTGTCCATTTAGTTATGTGCCAAATCTGGATGCAGGGAGCAGTGAAGAAGAAAGAGTCTCAACGAAGAACGATGCGAAGACTCGGCTCAATTGCTCTAATGAAAAGAGAAGAAAGTTGGCTCTTGGTCCCAATTCTTCAAGCTCAAATAAGAATGCTGAAGATAACTTGAATGTGGAACCAATTGAGAATGTATCTGAGATCCTTAAAAAAGATGACAAAACTCTGAAAGTTGAGCATAGAATGTGTGCAAATTTTAACACCAAATCTGATGGAAAACAAGCCAAAGGAGGCTCTCAAAGTGTACAAGCCCCTAAGGAGAATTATGTTCATGTTCGAGCCCGACGGGGCCGAGCTACTAATAGCCATAGCCTTGCAGAAAGGGTTAGGAGGGAAAAGATCAGTGAAAGAATGAAGCTGCTGCAAGAGCTTGTTCCTGGATGCAATCAGATTACCGGGAAAACCGTTGTGCTAGATGAAATTATCAGTTATGTGCAATCACTTCAACAACAGGTTGAGTTTCTATCGATGAAACTCGCCGATGTCGGTCCAGAATCAAACTTGGATACAGAGGAGATTCTACTCAGAAATATTCTTCGTGCACAAGGTGAAAACGTCGACAGTGTTCTTGCAATCAATCCTAGATTAACCACATCTCACACAACTCATCAAGCTACATTTCAACTTCATGGAACAATACCAACAATGCCAAGAACATCTCAGAAACTTTCTAGCCTTTCCAAGATGAAACGATAA 1080 41.2 MAGSVIEYEFNCSYGISPQPMSENNASEMALGSVSIFKSTVEADNSFSSGFGASATVPLESEGVKTTSHLLHDPSSLSFDMFGSGNFSEMVGSFGFVTEGHQSQIATIKCPFSYVPNLDAGSSEEERVSTKNDAKTRLNCSNEKRRKLALGPNSSSSNKNAEDNLNVEPIENVSEILKKDDKTLKVEHRMCANFNTKSDGKQAKGGSQSVQAPKENYVHVRARRGRATNSHSLAERVRREKISERMKLLQELVPGCNQITGKTVVLDEIISYVQSLQQQVEFLSMKLADVGPESNLDTEEILLRNILRAQGENVDSVLAINPRLTTSHTTHQATFQLHGTIPTMPRTSQKLSSLSKMKR 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40466769 40469193 + Maker00025288 Lcy13g2155 652460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2155 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 289 IPR036638 GO:0046983(InterPro)
Lcy13g2155 359 Gene3D - 223 295 IPR036638 GO:0046983(InterPro)
Lcy13g2155 359 MobiDBLite consensus disorder prediction 148 164 - -
Lcy13g2155 359 MobiDBLite consensus disorder prediction 141 164 - -
Lcy13g2155 359 SMART finulus 232 282 IPR011598 GO:0046983(InterPro)
Lcy13g2155 359 FunFam Basic helix-loop-helix transcription factor 223 295 - -
Lcy13g2155 359 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 121 327 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy13g2155 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 276 IPR011598 GO:0046983(InterPro)
Lcy13g2155 359 Pfam Helix-loop-helix DNA-binding domain 229 277 IPR011598 GO:0046983(InterPro)
Lcy13g2155 359 CDD bHLH_AtBPE_like 216 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2155 Lcy-Chr13:40466769 Lcy7g0378 Lcy-Chr7:3190844 3.46E-40 dispersed
Lcy13g2155 Lcy-Chr13:40466769 Lcy9g2042 Lcy-Chr9:45292387 8.82E-08 wgd
Lcy13g2155 Lcy-Chr13:40466769 Lcy9g2004 Lcy-Chr9:44925824 1.38E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19451 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2155 - - - 0.0