Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2156 ATGGCTCCTTGGTGGGGAAAAGAAAGCCACAAGGGAACCCCTGTTGTTGTCAAGATGGAGAATCCCAACTGGTCAATGGTCGAACTTGAAGGTCCTTCCGATGATGACTTCATCATCGGCGCCGAGTCGCCGCAGGGCCGAGCCAGAGATAAAGGGCGAGGCAAAAATGCCAAACAGCTCACTTGGGTCCTTCTTCTTAAAGCCCACAAGGCTGCCGGTTGTTTAACCTCCATTGGCTCTGCATTGGTCAACATCGGCGCCGCTGTTAAACGCCGTCTTGCTTCCGGAAAAACCGACGCCGACAATGACAACGCTGACGGCGGCGTGAGGGAGAACCCAACTGTCAAAACCAGGTTTTATTTGTTTATTAAGATTTTCCTTTGGCTGTCGGTGCTTCTGTTAGGGTTTGAGGTGGCGGCATATTACAAGGGCTGGCATTTTGGGGCACCCCATCTTCAATTGGACTACTTGTGGACAGTCCCATTTGGGGTTAAGGATGTTTTCGACTGGTTTTATTTGAAATGGGTTGTGATTCGTGTTGAATATTTTGCTCCTCCTCTCCAGTTTTTGGCCAATGTTTGTATAGTGTTGTTCCTTATCCAGACTTTGGATAGGCTGATTCTTTGTTTGGGTTGTTTCTGGATCCGATTCAAGAAAATCAAACCTGTTCCTAATGTTGGTCCCTTGGATCTTGAATCTGGAGAGACTGGCTACTTCCCCATGGTTCTTGTTCAGATCCCAATGTGCAATGAGAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTGGATTGGCCAAAAGATAAGTTACTGATTCAGGTTCTTGATGACTCGGACGATCCAATCACCCAATTGCTGATCAAAGAGGAGGTTCATAAATGGCAGCAACTCGACGCCAACATTGAGTATCGGCATCGGGTGATCCGAGAGGGTTATAAGGCAGGCAATCTCAAATCTGCCATGAATTGCAGCTATGTCAAAGACTATGAATTTGTTGCCATCTTTGATGCTGACTTTCAGCCTGGCTCAGATTTCCTTAAAAGAACAGTTCCTCATTTTAAGGATAATGAGGAACTAGGACTAGTTCAAGCGCGGTGGTCGTTTGTCAACAAGGACGAGAACTTGTTAACCAGGCTGCAGAACATTAACTTAGCCTTCCATTTCGAAGTGGAGCAACAAGTGAATGGAGTGTTTCTCAATTTCTTTGGATTCAATGGAACGGCTGGTGTTTGGAGGATAAAGGCTCTTGAAGAAGCCGGTGGCTGGTTGGAAAGAACCACTGTTGAGGACATGGACATTGCCGTTCGTGCTCATCTTCATGGTTGGAAATTCATATTCCTCAATGATGTAGAGTGCCAATGCGAATTACCGGAGTCGTATGAAGCTTATAGAAAACAACAGCACAGATGGCATTCTGGACCAATGCAATTGTTTCGTCTTTGTTTGCCTGACATAGTTCGATCAAAGATTGGCATAGCGAAGAAATTCAATTTGATCTTCCTGTTCTTTCTCCTACGAAAGCTGATATTACCGTTCTATTCGTTTACCCTTTTCTGCATAATTCTCCCAATGACGATGTTCGTTCCCGAAGCCGAGTTACCAGCATGGGTTGTATGTTACATTCCAGCTACCATGTCTTTTCTCAACATTCTACCAGCACCAAAGTTCTTCCCCTTCATTGTCCCTTACCTCCTCTTTGAGAACACAATGTCAGTAACCAAGTTCAATGCAATGGTCTCGGGACTCTTCCAGTTGGGCAGCGCATACGAATGGGTCGTTACGAAGAAATCAGGCCGCTCCTCCGAAGGTGATCTCGTCTCAATAGTAGGGAAAAAAGAGTTGAAAACTCAAAAGAGTATCTCTGCAAACAACCTTGAGGAGATTGAGTTAATCCAAAAACAGGACAAGAAGTTGCCAAGGAAGAAGCATAACAGGATATACATGAAGGAACTAGCACTGGCTTTCCTTCTTCTAACAGCCTCAGCGAGAAGCCTCCTCTCAGCTCAAGGAATTCATTTCTACTTCTTGATGTTTCAGGGAATATCCTTCCTCCTCGTCGGTCTAGACTTGATCGGTGAACAGGTTGCTTGA 2097 45.3 MAPWWGKESHKGTPVVVKMENPNWSMVELEGPSDDDFIIGAESPQGRARDKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSALVNIGAAVKRRLASGKTDADNDNADGGVRENPTVKTRFYLFIKIFLWLSVLLLGFEVAAYYKGWHFGAPHLQLDYLWTVPFGVKDVFDWFYLKWVVIRVEYFAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPNVGPLDLESGETGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITQLLIKEEVHKWQQLDANIEYRHRVIREGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPGSDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGIAKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLVSIVGKKELKTQKSISANNLEEIELIQKQDKKLPRKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLMFQGISFLLVGLDLIGEQVA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40481904 40485939 - Maker00025393 Lcy13g2156 652461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2156 698 Pfam Glycosyl transferase family group 2 334 540 IPR001173 -
Lcy13g2156 698 FunFam probable xyloglucan glycosyltransferase 5 233 458 - -
Lcy13g2156 698 SUPERFAMILY Nucleotide-diphospho-sugar transferases 242 521 IPR029044 -
Lcy13g2156 698 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 233 457 IPR029044 -
Lcy13g2156 698 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 169 697 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2156 Lcy-Chr13:40481904 Lcy9g1762 Lcy-Chr9:42822519 1.03e-315 dispersed
Lcy3g1330 Lcy-Chr3:39597228 Lcy13g2156 Lcy-Chr13:40481904 9.54E-143 transposed
Lcy13g2156 Lcy-Chr13:40481904 Lcy9g2003 Lcy-Chr9:44915253 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2156 - - - 0.0