Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2159 CTACTAGCTAGATACTATAGTGATCATATCATGGCAATGTTGTCTAGCAAAGCTAGCCATGATTCTCATGGCCAGGACTCTTCCTACTTCTTTGGATGGCAAGAGTACGAGAAGAATCCTTATCATCCAACTCGAAACCCCACCGGAATTATCCAAATGGGTCTCGCCGAAAACGAGCTATCTTTCGACCTATTGGAAGAGTGGCTGGCCAAGAATCCAGACGCCTTGGGATTGAGAAGAAATGGAGAGTCTGTGTTTAGAGAATTGGCTCTATTTCAAGACTATCATGGCTTGCCTGCTTTCAAAAAAGAGCTGGTTGAATTGATGGCGGAAATACGAGGAAACAAAGTACAGTTTGATGTGAATAAACTGGTCCTCACCGCTGGTGCAACTTCTGCAAATGAGATCCTAATGTTTTGTCTTGCCGAACCTGGAGAAGCTTTTCTTGTTCCCACTCCTTATTATCCAGGGTAA 474 43.88 LLARYYSDHIMAMLSSKASHDSHGQDSSYFFGWQEYEKNPYHPTRNPTGIIQMGLAENELSFDLLEEWLAKNPDALGLRRNGESVFRELALFQDYHGLPAFKKELVELMAEIRGNKVQFDVNKLVLTAGATSANEILMFCLAEPGEAFLVPTPYYPG 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40524948 40525648 + Maker00025252 Lcy13g2159 652464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2159 157 SUPERFAMILY PLP-dependent transferases 13 157 IPR015424 -
Lcy13g2159 157 Gene3D - 83 157 IPR015421 -
Lcy13g2159 157 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 14 156 IPR050478 GO:0006520(PANTHER)|GO:0008483(PANTHER)|GO:0016847(PANTHER)
Lcy13g2159 157 Gene3D Aspartate Aminotransferase, domain 1 11 82 IPR015422 -
Lcy13g2159 157 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 86 102 - -
Lcy13g2159 157 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 123 143 - -
Lcy13g2159 157 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 145 157 - -
Lcy13g2159 157 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 53 79 - -
Lcy13g2159 157 Pfam Aminotransferase class I and II 51 156 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2159 K01762 - - vvi:100258512 251.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2159 Lcy-Chr13:40524948 Lcy6g1066 Lcy-Chr6:11753053 9.42E-78 dispersed
Lcy1g0883 Lcy-Chr1:7647647 Lcy13g2159 Lcy-Chr13:40524948 2.42E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020654 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 2