Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2163 ATGTATGTTATGAAATGCTCTAAAGATGAGAATTTCAAACGAGGCCAACTGAGCCGTTATGGGAACATTGAGTTGAGCCCTTCTGCTGGGGTTCTAAATTATGGCCAGGGATTATTTGAAGGTCTGAAAGCATATAGGAAAGAAGATGGAGGTCTTCTTCTCTTTCGTCCGCACCAAAATGCTCTTCGTATGAGGTCCGGTGCTGAACGAATGTGTATGCCGTCGCCCTCCATCGAACAATTTATTGATGCTGTGAAGCAAACTGCCATTGCTAATAGGCGTTGGATCCCTCCACCAGGGAAAGGATCACTATACATAAGGCCTTTGCTCATTGGAACTGGTCCTATTCTCGGTTTGGCACCTGCACCCGAGTATACTTTTCTAGTTTATGCTTCCCCTGTTCGTAACTATTTCAAGGAAGGCTCGGCACCGTTGAACCTATATGTCGAGAAAGAGTTCGATCGTGCATCTCGTGGTGGAACTGGAGGTGTGAAAACCATTTCAAATTATGCTCCAGTCTTGAAAGCTATCACCAGAGCAAAAGGCCAAGGATTTTCTGATGTCTTATACCTTGATTCAGTGAATAAGAGAAATCTGGAGGAAGTTTCTTCTTGCAACATTTTTGTTGTAAAGGGCAATGTAATTTCAACTCCTGCTACAAGTGGAACAATTCTTCCAGGAGTAACCCGGAAAAGCGTCATTGAAATTGCCCGTGGTCGCGGTTACGAGGTTGAAGAACGGGCTATTGACATGGAAGAACTGTTCGATGCTCGTGAAGTTTTCTGCACGGGAACTGCCGTCGGTGTGGCCCCTGTTGGCAGCATCACATGTATGGATAGAAGGATTGAATACCAAACTGGTGCTGAGACAACATGCCAAGAACTGTATTCAGCTCTTGTTGGGATTCAAACTGGAACCATTGAGGATAAGATGGGCTGGACTGTTGAGATCTCTTGA 957 45.04 MYVMKCSKDENFKRGQLSRYGNIELSPSAGVLNYGQGLFEGLKAYRKEDGGLLLFRPHQNALRMRSGAERMCMPSPSIEQFIDAVKQTAIANRRWIPPPGKGSLYIRPLLIGTGPILGLAPAPEYTFLVYASPVRNYFKEGSAPLNLYVEKEFDRASRGGTGGVKTISNYAPVLKAITRAKGQGFSDVLYLDSVNKRNLEEVSSCNIFVVKGNVISTPATSGTILPGVTRKSVIEIARGRGYEVEERAIDMEELFDAREVFCTGTAVGVAPVGSITCMDRRIEYQTGAETTCQELYSALVGIQTGTIEDKMGWTVEIS 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40559615 40563711 - Maker00025158 Lcy13g2163 652468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2163 318 ProSitePatterns Aminotransferases class-IV signature. 201 230 IPR018300 GO:0003824(InterPro)
Lcy13g2163 318 FunFam Branched-chain-amino-acid aminotransferase 1 144 - -
Lcy13g2163 318 Gene3D - 148 318 IPR043132 -
Lcy13g2163 318 FunFam Branched-chain-amino-acid aminotransferase 146 317 - -
Lcy13g2163 318 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 1 314 IPR036038 GO:0003824(InterPro)
Lcy13g2163 318 NCBIfam branched-chain-amino-acid transaminase 13 317 IPR005786 GO:0004084(InterPro)|GO:0009081(InterPro)
Lcy13g2163 318 Gene3D - 1 147 IPR043131 -
Lcy13g2163 318 CDD BCAT_beta_family 24 305 IPR033939 GO:0004084(InterPro)|GO:0009081(InterPro)
Lcy13g2163 318 PANTHER AMINO ACID AMINOTRANSFERASE 1 317 IPR005786 GO:0004084(PANTHER)|GO:0004084(InterPro)|GO:0009081(InterPro)
Lcy13g2163 318 Pfam Amino-transferase class IV 37 275 IPR001544 GO:0003824(InterPro)
Lcy13g2163 318 PIRSF BCAT1 1 318 IPR005786 GO:0004084(InterPro)|GO:0009081(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2163 K00826 - - csv:101214004 574.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0881 Lcy-Chr1:7596845 Lcy13g2163 Lcy-Chr13:40559615 4.26E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g592 . . . . . . . . . Cmo12g00558 . . . . Sed11g0902 . Cpe07g00540 Bhi04g00473 Tan02g1671 Cmetu03g0040 . Hepe08g1366 . Lcy13g2163 Cla08g01649 Cam08g2152 Cec08g1741 Cco08g1859 Clacu08g1840 . Cre08g1624 . . Cone17ag0909 Cone20ag0253 . . . Cme03g02133 . . . . . . . . . . . Cma12g00621 . Car05g00099 . . . . . . . . . . . . . . . . . Lsi08g01558 . Chy03g01624 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007941 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36