Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2164 ATGGAAGATCAGTACAACCCTCATGGTGATAGCTCTAGGGGAAATTTCTTGTACACTTCAGTCCCCGTTTTGGCCACCAATTCGTCTTCCCCTGCGGGCAATTTCGTAATTAGACCCTCTTCTTCAAATGGAGCTGGCTCAATTTTTGGCAATCCCATGGCTGTAAATAATCTCGCCGGCGACTGTAATTTTCAGCCGTCCGATCAAGAATTCCGGCTTGTAAAAGTGGAGCCGAGTGGTTCACAATCTCATCATCATCATCAACAACAACAGCAGCAACAAGTTCATGATTTTCATTACCATTTAATGAGAGAGTTTCAAATTAGTAGCGGTGGAAGTATCGATGTCGACGCCATGAAGGCTAAAATTATCTCTCACTCTCAATTCTCTAATCTTCTCCAAGCTTTCTTGGATTGCCAAAAGGTTGGAGCTCCGCCGGAGGTGGCGGCGAAGCTTGCTTCGATACGAGAGGAATTTGAGGAGCGGCGGCGGTCTTCAATGGCGTCTACTACTGGGGGTTCGAGTGATCCAGAACTTGATCACTTCATGGAAGCTTACTATGGGATGTTGGTGAAGTATAGAGAGGAGCTGACAAGGCCTATTCAAGAAGCTGCAGATTTCATGCAGAGAATTGAATCTCAGCTCAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGCGACAGAAGAGAAGTGCGAAGGAATGGGATCATCGGAGGAGGAGCAAGAGAAGGGCGGGGAAGGAGAAAGAGATGCAACGGATCAAATCGACCCACGTGCGGAAGAGCGAGAGCTAAAGAATCACTTATTGAAAAAGTACAGTGGGTATCTGAGCAGTCTAAAGCAAGAGCTTTCAAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGACGCAAGACAAGAGCTACTCCGATGGTGGGAATTGCACAACAAATGGCCATACCCATCGGAGGCAGAAAAGTTGGCGCTGGCGGAATCCACTGGGTTGGATCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAGCCGTCTGAGGATGTGCAGTTCATGGGCATGGAGGGGTTTTACCATCCCAATGCTGCTGCCTTTTACTTCGATGGCCATTACATGGCCGACGCCCATTGTCGATTGGGTCCTTGA 1158 46.89 MEDQYNPHGDSSRGNFLYTSVPVLATNSSSPAGNFVIRPSSSNGAGSIFGNPMAVNNLAGDCNFQPSDQEFRLVKVEPSGSQSHHHHQQQQQQQVHDFHYHLMREFQISSGGSIDVDAMKAKIISHSQFSNLLQAFLDCQKVGAPPEVAAKLASIREEFEERRRSSMASTTGGSSDPELDHFMEAYYGMLVKYREELTRPIQEAADFMQRIESQLNTLCNGSFQILASATEEKCEGMGSSEEEQEKGGEGERDATDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAFYFDGHYMADAHCRLGP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40572241 40577573 - Maker00025409 Lcy13g2164 652469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2164 385 CDD homeodomain 298 350 IPR001356 GO:0003677(InterPro)
Lcy13g2164 385 Gene3D - 283 355 - -
Lcy13g2164 385 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 115 356 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy13g2164 385 SMART KNOX2_2 169 220 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy13g2164 385 Pfam Homeobox KN domain 306 345 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g2164 385 MobiDBLite consensus disorder prediction 232 260 - -
Lcy13g2164 385 ProSitePatterns 'Homeobox' domain signature. 324 347 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy13g2164 385 MobiDBLite consensus disorder prediction 235 260 - -
Lcy13g2164 385 SMART ELK_2 178 198 IPR005539 GO:0003677(InterPro)
Lcy13g2164 385 SMART ELK_2 266 287 IPR005539 GO:0003677(InterPro)
Lcy13g2164 385 Pfam KNOX1 domain 118 160 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy13g2164 385 ProSiteProfiles ELK domain profile. 266 286 IPR005539 GO:0003677(InterPro)
Lcy13g2164 385 SMART KNOX1_2 117 161 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy13g2164 385 SMART HOX_1 288 353 IPR001356 GO:0003677(InterPro)
Lcy13g2164 385 ProSiteProfiles 'Homeobox' domain profile. 286 349 IPR001356 GO:0003677(InterPro)
Lcy13g2164 385 Pfam ELK domain 266 287 IPR005539 GO:0003677(InterPro)
Lcy13g2164 385 SUPERFAMILY Homeodomain-like 287 359 IPR009057 -
Lcy13g2164 385 Pfam KNOX2 domain 175 219 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2164 Lcy-Chr13:40572241 Lcy4g0524 Lcy-Chr4:6300644 4.19E-76 dispersed
Lcy13g2164 Lcy-Chr13:40572241 Lcy9g1996 Lcy-Chr9:44828107 6.23E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19453 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2164 - - - 0.0