Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2165 ATGATCACCGAATCAATGCTCCTCAATCCAACAGCCCACATTTCATCCTGGGACTCCCTCGACGATTCCGCCGCCGGAATCCCCTCCTATTTCGCCGCCGACCACTTGTCGCCGCTCGACTCGCCGACGTCGGCGCTCATGGAGTTCGATTCGTCGTTCTGGGAGGATCAGGATCTGCCGGCGGCGGTGGACGCCTTCTCGTGCGACCATTTCCGGATGTACGACTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGTCCGTACGCTCACGCCGGCGAGAAGGCTCGCCGCCGGGATCCGAGGAAGTTCAACTACTCCGGCGTCGAGTGCCCGAATTTACGCCATGGGAGTTGTAAAAAAGGGGATGCCTGTGAGTACGCTCATGGAGTTTTCGAAATCTGGCTCCACCCGGACCGGTACCGGACTCAGCCGTGCCGTGACGGAATCGGCTGCCGGCGGCGAGTCTGTTTCTTCGCCCATACTTCGGAGCAACTCCGGATTCCTGCAAAACAGAGCCTCCGGTCTCCACGGGCGGCGACTGTATCATCGCCGACGTCGATCCTAATCTCGCCGTCGTCGGACTCCCCTCCGATGTCTCCGATCAGCCCTGCAACCACCGGCGGCGAATCGTTCAGCAGATTAGCCGCATTGATGCACAATCTCCAGCTTGAGGAATTAAAGCCGAACCCGTCAGTCGCCGGATTCGGTTCAAGTCTCCGGCGGAACTCCGGCGGATTCGATCTATGGGACAGAAGTAACGAAGAAGAACCAGCAATGGAGAGAGTGGAATCGGGAAGAAACCTCCGAGCCCAAATGTACGCCAAATTAATGCGAGAGAATTCAGTGGACAGATCGCCGCCGCTGATATGGGCTGGATCTCGGAGCTAA 906 58.39 MITESMLLNPTAHISSWDSLDDSAAGIPSYFAADHLSPLDSPTSALMEFDSSFWEDQDLPAAVDAFSCDHFRMYDFKVRTCARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGVECPNLRHGSCKKGDACEYAHGVFEIWLHPDRYRTQPCRDGIGCRRRVCFFAHTSEQLRIPAKQSLRSPRAATVSSPTSILISPSSDSPPMSPISPATTGGESFSRLAALMHNLQLEELKPNPSVAGFGSSLRRNSGGFDLWDRSNEEEPAMERVESGRNLRAQMYAKLMRENSVDRSPPLIWAGSRS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40596457 40597362 + Maker00025438 Lcy13g2165 652470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2165 301 Gene3D - 108 178 - -
Lcy13g2165 301 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872(InterPro)
Lcy13g2165 301 PANTHER UNKEMPT FAMILY MEMBER 55 231 IPR045234 -
Lcy13g2165 301 SMART c3hfinal6 110 136 IPR000571 GO:0046872(InterPro)
Lcy13g2165 301 SMART c3hfinal6 145 168 IPR000571 GO:0046872(InterPro)
Lcy13g2165 301 MobiDBLite consensus disorder prediction 190 211 - -
Lcy13g2165 301 FunFam Zinc finger CCCH domain-containing protein 66 68 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2165 Lcy-Chr13:40596457 Lcy4g2216 Lcy-Chr4:48809440 2.85E-75 dispersed
Lcy13g2165 Lcy-Chr13:40596457 Lcy2g0889 Lcy-Chr2:8141815 3.40E-79 wgd
Lcy13g2165 Lcy-Chr13:40596457 Lcy9g1994 Lcy-Chr9:44798174 1.79E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19454 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2165 - - - 0.0