Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2167 ATGGATTTCATGAAGGTTTTCGATCAAACTGTCCGTGAAATAAAGAGAGAGGTGAATTTGAAGGTCTTGAAGGTTCCGGAAATCGAACAGAAGGTGCTGGATGCAACAGATGATGAACCATGGGGTCCTCATGGATCTGCATTGTCAGAAATAGCGCAAGCTACAAAGAAATTTTCTGAAACTCAGATGGTGATGAATGTTCTCTGGACAAGATTGAGTGAAACTGGTAAGAATTGGCGTCTTGTCTATAAGGCTTTGGCTGTTATAGAGTATTTGGTGGCACATGGATCTGAACGTGCAGTGGATGACATTATTGAACATACTTTCCAGATATCTTCACTCTCGAGTTTTGAATATGTTGAGCCAAGTGGAAAGGACATGGGAATTAATGTCAGGAAGAAGGCTGAAAACATTGTAGCGCTTTTGAATGATAAAGATAAAATACAAGAAGTGAGAAATAAAGCAGCTGCAAATCGTGAAAAGTACTTTGGACTATCATCTACTGGAATTACTTACAAGTCAGGTTCAGCCTCGTATGGCAGCAGTAGTTATTATAGCAGTGATAGTTATCAAAGTCAGAGTAGATTTGGTGATAGGAGCAGCGACAGGGATTCCTATAGAAAGGAAAAAGATGACCAAGATGTCTTTAAAAGGTCAGATTGGGCTACTAAGCAGGATCATGGCAAGGGTTCTGCACGAAACAGCAGGTATGTACTTGTTGAATGCTTACCTTCTTACTTGATTCTATTTGCTGTATATGGCGTAACATTCTTGGAGAAGGTTCTGCAAACAAACAACACATCTGTTCCTTTGAGGCAGGGTTCTTTGGTTGAGTTTCGTTTGGACTCTTTTTATGTTGCCTTGCTTCCTACTAATATGGAGAATTCTATTTTAGCAAGGATCAAGGTAAAACATCATTTAGTACATCGAAGTCATCAAAAAAGTCGAATGATTCTGCAAATCAGAGTGCCTCCTTCAGTTCTGGCACCCATACAAATAATTCTGACAAAGATTTTGATGATTTTGATCCGCGTGGGACTTCCACCACCACCACCACCACCACCACAAGTAAGTGTTTTGAATTTTGAAATGTTTGTGCTTCAATTCTCTCATTCTGAATCAAACTTTTTGACAGAAGCTGCTGTACCAAGCCCCAGTGGAGTGGATCTTTTTGGAGACAGTTTAATTGGAGATCTCATGGATGCTCCAACTCTTGTTCCTCCTGGAAAGCCTGACAGCAACTCTCCGGAGGTTGATCTGTTTGCAGATGCTACATTTGTATCAGTTTCACCGCAAATGGAAAAAGAATCCAATTCCTCGTTAAAGACTGAGGTTGATCTATTCGCTTCACAACCTACTTCGGTTTCTGCAACAGTTGATTTTTTTGCCTCTCCTGAGCCGGTTGTGCAAACAGGAACCAACTTTGCCAGTGCAGCAGGAGAGAGTAAAGCTTCTCAACCTGCTTCAGTTTCTGCACCAGTTGACCTTTTTGCCTCTCCTGAGCCGGTTGTGCAATCAGACACCAACTTTGCCAGTGCAGCAAGAGACATTAAAGCTTCACAACCTGCTTCAGTTTCTGCACCAGTTGACTTTTTTGCCTCTCCCGAGCCGGTTGTGCAAACACAAACCAACTTTGCTAGCGCAGCAACAGACAGTAAAGTTGTGGATCCATTTGCTGCTCTTCCACTTAACTCTTTCGATGGATCAGATCTTTTCGGTGCAACCTCCTCCCATTCCGAACCAATGTCATCAGCAGAACCTTCCCAAAATCCTGTTGGTGGCCCATCTAATAATTTAAATGGAAAATCTATCAACAATACAACAGCTCCAGCCAAGAAGAATACTTTCCAGGTCAAATCTGGGATTTGGGCAGATTCACTAAGTCGAGGATTGATTGATCTTAATATCTCTGCTCCCAAGAAGGTTTCCCTGGTAGACGTCGGTGTCGTAGGCGGACTGAGCGATTTCTCAGATGAGAGGGAGAAGGGACCAGCACCTACTTATCACATGGGGCAAGCAATGGGTGCAGGATCTGGTCTTGGTAGGACAGGATCGCAGGCGATTGGAGACGATTTCTTTTCGCAACTTTCTGGTCAACAATACCAATTTGGCACTTTCCAGAAGTAA 2127 42.74 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDDEPWGPHGSALSEIAQATKKFSETQMVMNVLWTRLSETGKNWRLVYKALAVIEYLVAHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNDKDKIQEVRNKAAANREKYFGLSSTGITYKSGSASYGSSSYYSSDSYQSQSRFGDRSSDRDSYRKEKDDQDVFKRSDWATKQDHGKGSARNSRYVLVECLPSYLILFAVYGVTFLEKVLQTNNTSVPLRQGSLVEFRLDSFYVALLPTNMENSILARIKVKHHLVHRSHQKSRMILQIRVPPSVLAPIQIILTKILMILIRVGLPPPPPPPPQVSVLNFEMFVLQFSHSESNFLTEAAVPSPSGVDLFGDSLIGDLMDAPTLVPPGKPDSNSPEVDLFADATFVSVSPQMEKESNSSLKTEVDLFASQPTSVSATVDFFASPEPVVQTGTNFASAAGESKASQPASVSAPVDLFASPEPVVQSDTNFASAARDIKASQPASVSAPVDFFASPEPVVQTQTNFASAATDSKVVDPFAALPLNSFDGSDLFGATSSHSEPMSSAEPSQNPVGGPSNNLNGKSINNTTAPAKKNTFQVKSGIWADSLSRGLIDLNISAPKKVSLVDVGVVGGLSDFSDEREKGPAPTYHMGQAMGAGSGLGRTGSQAIGDDFFSQLSGQQYQFGTFQK 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40609774 40617488 + Maker00025315 Lcy13g2167 652472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2167 708 CDD ENTH 28 144 - -
Lcy13g2167 708 ProSiteProfiles ENTH domain profile. 20 152 IPR013809 -
Lcy13g2167 708 MobiDBLite consensus disorder prediction 572 611 - -
Lcy13g2167 708 Gene3D - 24 163 IPR008942 -
Lcy13g2167 708 SMART enth_2 26 152 IPR013809 -
Lcy13g2167 708 MobiDBLite consensus disorder prediction 184 211 - -
Lcy13g2167 708 Pfam ENTH domain 27 147 IPR013809 -
Lcy13g2167 708 PANTHER EPSIN/ENT-RELATED 4 685 - GO:0005543(PANTHER)|GO:0005768(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0030125(PANTHER)|GO:0030276(PANTHER)
Lcy13g2167 708 FunFam Clathrin interactor 1 18 165 - -
Lcy13g2167 708 MobiDBLite consensus disorder prediction 197 211 - -
Lcy13g2167 708 SUPERFAMILY ENTH/VHS domain 7 152 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2167 K12471 - - csv:101214728 547.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2167 Lcy-Chr13:40609774 Lcy3g1184 Lcy-Chr3:37143894 1.05E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g46 . . . . . . . . Cmo05g00117 Cmo12g00561 . Cma05g00111 . Car12g00571 . Cpe07g00544 . Bhi04g00480 . . . Hepe08g1372 . Lcy13g2167 . . . . . . . Cone4ag1645 Cone7ag1303 . . . . . . . . . . . . . . . . . . Cma12g00623 . Car05g00096 Cpe11g00091 . . . . . . . . . . . . . . . Lsi08g01563 Csa02g01858 Chy03g01627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006203 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 38