Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2174 ATGGCTCGAATCCCCACCGGACCTTTAATCTTTCTCTTTTTCCTCGCCGTGATCGGCTTGGCTTCCGGTGGCCGGGACCTTCCTGGAGATTTTCTCCGGCTGCCGTCCGAGGCCTTGAAATTTTTTCGCGGAGGAGCTTCCGATGCTAACGACGAGGACTCCGTGGGGACGAAATGGGCTGTTTTGCTCGCCGGTTCAAATGGATACTGGAATTACAGGCACCAGCTAATTATTTCAACCTTGGTTTATTTTGTGAGTGATGTTGAAGCTTCAGATAATGATGATTCCATTTTCCACCAGGCTGATATCTGCCATGCTTATCAATTGTTGCGGAAAAATGGGCTAAAAGATGAGAACATCATCGTATTCATGTATGATGACATTGCCTACAATTCAGAGAACCCAAGACCCGGGGTCATCATCAACCATCCACATGGTTCTGATGTTTATCATGGAGTTCCAAAGGATTACACTGGTGAGGATGTTAACGTGAACAACTTTTTCGCTGCCATTCTTGGAAACAGAACAGCTCTTACGGGGGGTAGTGGGAAGGTTGTTGACAGTGGTCCTAATGATCATATTTTCATATACTACAGTGATCATGGTGGCCCTGGTGTGCTTGGGATGCCTACTTATCCCTATATGTATGCGGACGATCTTAATGAAGTTTTGAAGAAGAAGCATGCTTCTGGATCCTACAAAAGTCTGGTATTTTATCTCGAAGCTTGTGAATCAGGAAGTATCTTTGAAGGCATTCTACCCGAAGGTTTGAACATTTATACAACCACCGCATCAAATGCTTATGAGAGCAGTTGGGGTACTTACTGTCCAGGGGATTATCCTAGTCCTCCACCAGAGTATGATACTTGCTTGGGTGACTTGTACAGTGTTGCTTGGTTGGAAGACAGTTTATTTGATTCCGAACCTCATGGTTTTGACTTCGGTGCTGTAAACAGTGATAAACACAATTTGAAGACGGAAACTTTACACCAGCAATATGAACTGGTGAAGAAAAGGACGCTAAATGACAATTACGCTTATGGTTCCCATGTCATGCAATATGGTGATCTATCGCTCAACAAGAACGCTTTGTTCTCATATCTGGGTACAGATCCTGCCAATGAGAACAAAACTTTTGTCGAGGAGAACTCTTTGAGGCTAACCACAAAAGTTACCAATCAGCGTGACGCTGATCTGGTCCACTTTTGGGAAAAGTTTCGCAAAGCTCCAGAAGGCTCCACCAAGAAAGTTGAAGCTCAGAAGAAGTTTGTGGAAGCAATGTCCCACAGAGTTCATATCGACAACAGTGTGAAGCTAATTGGAAAGCTGTTATTTGGAATTGAAAAAGGTTCCGAGGTGCTCGACGCCATCCGTCCCACTGGACAACCCCTTGTCGATGATTGGGACTGTCTTAAGAATATGGTTAGGAGCTTTGAGGCACGCTGTGGATCCCTCTCCCAGTACGGAATGAAACACATGAGATCCTTTGCAAACCTCTGCAATGCTGGAATCAGCAAGGAGCAGATGGCAGAGGCATCGGCGCAAGCTTGCGTGAGCATCCCCTCGACCCCGTGGAGCTCTCTTCACAAGGGCTTCACAGCATGA 1605 45.73 MARIPTGPLIFLFFLAVIGLASGGRDLPGDFLRLPSEALKFFRGGASDANDEDSVGTKWAVLLAGSNGYWNYRHQLIISTLVYFVSDVEASDNDDSIFHQADICHAYQLLRKNGLKDENIIVFMYDDIAYNSENPRPGVIINHPHGSDVYHGVPKDYTGEDVNVNNFFAAILGNRTALTGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTYPYMYADDLNEVLKKKHASGSYKSLVFYLEACESGSIFEGILPEGLNIYTTTASNAYESSWGTYCPGDYPSPPPEYDTCLGDLYSVAWLEDSLFDSEPHGFDFGAVNSDKHNLKTETLHQQYELVKKRTLNDNYAYGSHVMQYGDLSLNKNALFSYLGTDPANENKTFVEENSLRLTTKVTNQRDADLVHFWEKFRKAPEGSTKKVEAQKKFVEAMSHRVHIDNSVKLIGKLLFGIEKGSEVLDAIRPTGQPLVDDWDCLKNMVRSFEARCGSLSQYGMKHMRSFANLCNAGISKEQMAEASAQACVSIPSTPWSSLHKGFTA 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40681843 40687070 - Maker00025382 Lcy13g2174 652479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2174 534 Pfam Peptidase C13 family 97 369 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Lcy13g2174 534 PIRSF AE 90 534 IPR043577 GO:0004197(InterPro)|GO:0051603(InterPro)
Lcy13g2174 534 PIRSF AE 4 81 IPR043577 GO:0004197(InterPro)|GO:0051603(InterPro)
Lcy13g2174 534 FunFam Vacuolar-processing enzyme beta-isozyme 83 393 - -
Lcy13g2174 534 Gene3D - 394 521 IPR046427 -
Lcy13g2174 534 PANTHER HEMOGLOBINASE FAMILY MEMBER 46 517 IPR001096 GO:0004197(PANTHER)|GO:0006508(InterPro)|GO:0006624(PANTHER)|GO:0008233(InterPro)|GO:0051603(PANTHER)
Lcy13g2174 534 Gene3D - 56 393 - -
Lcy13g2174 534 CDD legumain_C 396 517 IPR048501 -
Lcy13g2174 534 FunFam Vacuolar-processing enzyme beta-isozyme 394 522 - -
Lcy13g2174 534 Pfam Legumain, prodomain 422 517 IPR048501 -
Lcy13g2174 534 PRINTS Hemoglobinase (C13) cysteine protease signature 84 108 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Lcy13g2174 534 PRINTS Hemoglobinase (C13) cysteine protease signature 109 138 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Lcy13g2174 534 PRINTS Hemoglobinase (C13) cysteine protease signature 184 203 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Lcy13g2174 534 PRINTS Hemoglobinase (C13) cysteine protease signature 233 249 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Lcy13g2174 534 PRINTS Hemoglobinase (C13) cysteine protease signature 156 171 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Lcy13g2174 534 PIRSF Legumain 90 534 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Lcy13g2174 534 PIRSF Legumain 7 80 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2174 K01369 - - csv:101216082 911.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1793 Lcy-Chr12:38968339 Lcy13g2174 Lcy-Chr13:40681843 3.88E-181 dispersed
Lcy13g2174 Lcy-Chr13:40681843 Lcy3g2330 Lcy-Chr3:50186487 2.66E-146 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g53 . . . . Bpe02g01534 . . . Cmo05g00111 Cmo12g00569 . Cma05g00105 . Car12g00576 Sed08g1757 Cpe07g00549 . Bhi04g00491 Tan02g1654 Cmetu02g1720 . Hepe08g1379 . Lcy13g2174 . . . . . . . Cone4ag1649 Cone7ag1300 . Cone20ag0258 . . . . Blo17g00296 Blo18g00291 Bda01g01323 Bda13g01611 Bpe14g00254 . Bma01g00929 . . . . . Cma12g00628 . Car05g00091 Cpe11g00085 . . . . . . . . . . . . . . . Lsi08g01572 Csa02g01849 Chy03g01635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005098 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41