Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2176 ATGGACGCGACCTCTTGCTCTGGCGCTCTTTCCAGTACCCTCAATTCGGATCACAGAGTTTCTACGTTATGCTCTGTGCCGAAATCCCTTGCGTCTTTCTCTTGCAAATCCTCTGGAAAATTGCAAGTTCGTGACAAGTCTACATCTCAAGGATTAGTGGTTTCTTGTTCTAGCTCCAATGGTCACAGAGATGTAATGCAAGGGCTACACCTTTCTGGCCCCATTGAGAAGAGAAGCCGTCTTGGACAAGCGTTTTGCTCAGTAGGATCTGTCACCTATGGTGAATTTTCTTTAGAATCTCACTCTCAGGCAGTGGAAGAGAAGGTTGGAGTTCTGCTCCTGAATCTAGGAGGGCCAGAAACGCTTGATGATGTTCAGCCATTTTTGTACAACCTATTTGCCGACCCGGATATTATTCGGCTCCCAAGGTTGTTCCGTTTCCTCCAAGAGCCATTGGCAAAATTAATTTCTACCTTCCGTGCTCCCAAAAGTAAAGAGGGGTATGCTTCAATAGGAGGTGGCTCACCTTTGCGTAAAATAACAGATGAGCAGGCACAGGCGCTTAAAATGGCTTTGGAAGAGAAAAACATATCTGCTAATGTCTATGTGGGAATGCGCTATTGGTACCCTTTCACAGAGGAAGCAATTCAGCAAATTAAGAGGGATGGGATAACAAGACTTGTGGTGCTGCCATTGTATCCTCAGTACTCTATTTCTACAACTGGGTCCAGTATTCGTGTTCTCCAGAAGATGTTCAGGGAAGATGCATATCTTTCAACATTGCCTGTTTCAATTATAAAGTCCTGGTATCGACGAGAAGGGTATATTAAGTCAATGGCTGACTTGATTCAGGCAGAGCTGAAGAATTTTGTAAACCCTCAGGAGGTCATGATTTTCTTTAGTGCACATGGGGTTCCCGTCAGTTATGTTGAGAATGCTGGAGATCCATACAAAGATGAAATGGAGGAGTGCATCTACCTGATCATGCAAGAGTTGAAAGCCAGAGGAATTGGAAATGAGCATACTCTTGCTTACCAGAGCCGCGTTGGACCTGTACAATGGCTGAAGCCATACACAGATGAAGTTCTTGTTGAGCTTGGCCAGAAGGGCATTAAGAGTCTCCTAGCTGTTCCCGTGAGCTTTGTGAGTGAGCACATTGAGACTCTTGAGGAGATAGATATGGAGTATAAGCACTTGGCACTTGAATCTGGGATCGAAAACTGGGGGCGTGTGCCTGCTCTCAACTGCAAATCTTCATTCATCGTGGATCTGGCTGATGCAGTAGTCGAAGCCCTTCCATCAGCCATGGCATTGTCGCCCAACAGAAGCTCCACAGATGCAGATGATCACGATCCTTTCCGATATGCTTTCAAATTATTATTTGGTTCAATCCTCGCATTCATCTTGTTACTCTCACCTAAAGCATTTCTAGCTTTTAGGAATAATTTCATTTAG 1455 44.81 MDATSCSGALSSTLNSDHRVSTLCSVPKSLASFSCKSSGKLQVRDKSTSQGLVVSCSSSNGHRDVMQGLHLSGPIEKRSRLGQAFCSVGSVTYGEFSLESHSQAVEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQEPLAKLISTFRAPKSKEGYASIGGGSPLRKITDEQAQALKMALEEKNISANVYVGMRYWYPFTEEAIQQIKRDGITRLVVLPLYPQYSISTTGSSIRVLQKMFREDAYLSTLPVSIIKSWYRREGYIKSMADLIQAELKNFVNPQEVMIFFSAHGVPVSYVENAGDPYKDEMEECIYLIMQELKARGIGNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGIKSLLAVPVSFVSEHIETLEEIDMEYKHLALESGIENWGRVPALNCKSSFIVDLADAVVEALPSAMALSPNRSSTDADDHDPFRYAFKLLFGSILAFILLLSPKAFLAFRNNFI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40701842 40705808 + Maker00025386 Lcy13g2176 652481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2176 484 FunFam Ferrochelatase 108 286 - -
Lcy13g2176 484 Pfam Ferrochelatase 108 431 IPR001015 GO:0004325(InterPro)|GO:0006783(InterPro)
Lcy13g2176 484 Gene3D - 270 413 - -
Lcy13g2176 484 Gene3D - 108 433 - -
Lcy13g2176 484 CDD Ferrochelatase_C 279 415 IPR033644 -
Lcy13g2176 484 CDD Ferrochelatase_N 109 270 IPR033659 -
Lcy13g2176 484 NCBIfam ferrochelatase 107 431 IPR001015 GO:0004325(InterPro)|GO:0006783(InterPro)
Lcy13g2176 484 Hamap Coproporphyrin III ferrochelatase [cpfC]. 107 432 IPR001015 GO:0004325(InterPro)|GO:0006783(InterPro)
Lcy13g2176 484 PANTHER FERROCHELATASE 103 433 IPR001015 GO:0004325(InterPro)|GO:0004325(PANTHER)|GO:0005739(PANTHER)|GO:0006783(InterPro)|GO:0006783(PANTHER)
Lcy13g2176 484 SUPERFAMILY Chelatase 107 439 - -
Lcy13g2176 484 ProSitePatterns Ferrochelatase signature. 298 317 IPR019772 GO:0004325(InterPro)|GO:0006783(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2176 K01772 - - csv:101216568 852.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2176 Lcy-Chr13:40701842 Lcy8g1660 Lcy-Chr8:43207522 5.35E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g60 . Blo12g01008 . . . . . . Cmo05g00110 Cmo12g00571 . Cma05g00103 . Car12g00578 Sed08g1759 Cpe07g00551 . Bhi04g00495 Tan02g1649 Cmetu03g0633 . Hepe08g1382 . Lcy13g2176 . . . . . . . Cone4ag1651 Cone7ag1299 . . . . . . . . . . . . . . . . . . Cma12g00630 . Car05g00089 Cpe11g00083 . . . . . . . . . . . . . . . Lsi08g01574 Csa02g01847 Chy03g01637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010052 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33