Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2177 ATGGCTGACGAAGCGCAGTATTCATCTGCTACTGATACTGCATCCAACAAGCGCAAGTACGAGGACCAAACTCCACCCATGGTCACCCGCCGCCCGACTGGCTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATTCGGCCCATCCTCCTCCTCCGTCCTACAACAACGTCCCGCCCCCTATGGACGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGCGGTGGCGTCGGGGCCGGTGCTGGCCCTGGCGTTGGAGCTGATGCCAAGCGCCCGAGGGTTGAGAACGGCGGCGGGTTTGATTCCTACGACAAGGGTTTTAGTTCTGGCCCAGACCTGAAGCCTCACATGTCAAGTTCAGCTCCTTCAGCGATACCTGTTTCCTATGGTTTCCAAGGGACAAGCAAGAAAATCGAAATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACTCGGATGGTTGAACTAATGGGTACTCCTGATCAAATTGCTAAGGCAGAGCAGTTGATTAATGATGTTCTCTCTGAGGCTGAATCTGGAGGTTCTGGCATAGTATCGCGAAGATTAACTGGTCCATCAGGATCCGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGTTTGGTTATTGGTAAAGGTGGTGAGACTATCAAAAGTATGCAAGCTAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCAGGGGATACATCTACAGAAAGAACATTGCAGATTGATGGTTCTAGCGAACAGATTGAGTCTGCAAAACAGTTGGTTAATGAAGTTATCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAACACTATTATGCCTAGTTGACATGGTTCTGCCTCAACACCAAGAGATGGAGGACATAAGGGTTAGGGTTATTGGACCATTAGTGACACCAACATGGAATCCTTTATGTTGGTGTTCTCTCAGCATTGCTCTGAATCGTGTGAGAAATTCAGGTATGTCAGGAGGGTATAATCAGCAAGGTTATCAAGCTCGACCCCCTTCAAGTTGGGGCCCTCCTGGGGCTCCACCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGTCCTTCGTCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCAGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACCGTTCCACCAAATCAGCCTACTACTCAGGGGAGTGGTTATGATTACTACAGTCAACAGCCCCCGCAGCAACAGCAGACACCTGGAGGTCCTGGTGCTGCAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCCTCTACTTATAACCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTACCATGCACCTCAGTCTGGTTATGGCCAGCCGCCTACTTATGATCAGCAAGGTTATGGTTCTGCTCCAAACTATGGTAATGTGGCCAATGCAGCCCAAGATGGCAATTCATATGGGTCTCAGGGGGACTCATCACAGACGGTCCCTCCTGCACAACCCTCTTCAGTGAGCCAGCAAGCTTATGGTGCAAATCAACAACAGCCTAGCCCTAACCCAGGGAGTTATCCTCCACCAAATCAGTCGGGGTATGGAATGACTGCACCTTCCCAAACTGGCTATGGAAATCAACCAGCCGCTCAAACTGGGTATGGGGCTAGTTACGGACCTCCTCAAACTCAGAAACAGCCTGCAAATCCTCCTGCATATGGTCAGAGTACTCAGTCACCGAGCACCCCGAGTGGCTATGGGCAACCTGCTGCTGCATTGCCGTCTGGTTATGCCAGTTCTCAGGCTCCCACATCTGGGTACACTCAATCTGATTCTGGTTCTCAACGTGCCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCCACAAATCAGCCGGGTTATGGTCAAGCTCCACCTCCATATAACTCCTCTTATGGTCCTGGTTACCCCCAGCCTCCATATTCTTCTGAAGGTAATGCAGCTGGGGCTGCTCGTGGGGGCTATGATTCTGCACCGGCTGCCCAGACAGCCCCGCAAAGTGGGGTCGCAAAAGCATCTCCAAAAAGTTGA 2253 50.42 MADEAQYSSATDTASNKRKYEDQTPPMVTRRPTGFSGPITSPSSDSAHPPPPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYDKGFSSGPDLKPHMSSSAPSAIPVSYGFQGTSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVISEVRLQILVPLTLLCLVDMVLPQHQEMEDIRVRVIGPLVTPTWNPLCWCSLSIALNRVRNSGMSGGYNQQGYQARPPSSWGPPGAPPMQQPGYGYGQQGGYSGPSSQYNMQQPPYQGYSQPASGGYASNWDQSTVPPNQPTTQGSGYDYYSQQPPQQQQTPGGPGAAGDNSGYSYGQPQASTYNQQGYSQDGYGGGYHAPQSGYGQPPTYDQQGYGSAPNYGNVANAAQDGNSYGSQGDSSQTVPPAQPSSVSQQAYGANQQQPSPNPGSYPPPNQSGYGMTAPSQTGYGNQPAAQTGYGASYGPPQTQKQPANPPAYGQSTQSPSTPSGYGQPAAALPSGYASSQAPTSGYTQSDSGSQRAPPSSYGTAAQPGFAPPPYGVPPTNQPGYGQAPPPYNSSYGPGYPQPPYSSEGNAAGAARGGYDSAPAAQTAPQSGVAKASPKS 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40705786 40711783 - Maker00025211 Lcy13g2177 652482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2177 750 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 235 404 IPR036612 GO:0003723(InterPro)
Lcy13g2177 750 Gene3D K Homology domain, type 1 138 230 IPR036612 GO:0003723(InterPro)
Lcy13g2177 750 Gene3D K Homology domain, type 1 231 312 IPR036612 GO:0003723(InterPro)
Lcy13g2177 750 MobiDBLite consensus disorder prediction 579 672 - -
Lcy13g2177 750 MobiDBLite consensus disorder prediction 400 470 - -
Lcy13g2177 750 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 124 546 - GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Lcy13g2177 750 MobiDBLite consensus disorder prediction 681 696 - -
Lcy13g2177 750 MobiDBLite consensus disorder prediction 1 61 - -
Lcy13g2177 750 MobiDBLite consensus disorder prediction 372 750 - -
Lcy13g2177 750 ProSiteProfiles Type-1 KH domain profile. 141 208 - -
Lcy13g2177 750 MobiDBLite consensus disorder prediction 510 570 - -
Lcy13g2177 750 MobiDBLite consensus disorder prediction 734 750 - -
Lcy13g2177 750 SMART kh_6 232 306 IPR004087 GO:0003676(InterPro)
Lcy13g2177 750 SMART kh_6 140 213 IPR004087 GO:0003676(InterPro)
Lcy13g2177 750 ProSiteProfiles Type-1 KH domain profile. 233 301 - -
Lcy13g2177 750 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 144 219 IPR036612 GO:0003723(InterPro)
Lcy13g2177 750 Pfam KH domain 237 303 IPR004088 GO:0003723(InterPro)
Lcy13g2177 750 Pfam KH domain 144 210 IPR004088 GO:0003723(InterPro)
Lcy13g2177 750 MobiDBLite consensus disorder prediction 477 496 - -
Lcy13g2177 750 MobiDBLite consensus disorder prediction 44 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2177 K13210 - - csv:101216803 1094.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2177 Lcy-Chr13:40705786 Lcy3g1096 Lcy-Chr3:35805933 4.07E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g62 . . . . . . . . Cmo05g00109 Cmo12g00572 . Cma05g00102 . Car12g00580 Sed08g1760 Cpe07g00553 . Bhi04g00496 Tan02g1648 Cmetu03g0500 . Hepe08g1383 . Lcy13g2177 . . . . . . . Cone4ag1652 . Cone17ag0917 Cone20ag0260 . . . . Blo17g00293 Blo18g00287 . Bda13g01608 Bpe14g00257 . . . . . . . Cma12g00631 . Car05g00374 Cpe11g00082 . . . . . . . . Cla08g01021 Cam08g1470 Cec08g1048 Cco08g1172 Clacu08g1174 . Cre08g0956 Lsi08g01575 Csa02g01846 Chy03g01638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007208 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 37