Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2178 ATGGGGGATTCGAGCGACTCGGTGTCGGTGGATATGGAGTCGATCTCTTCTGGGGGAAAGGTACCTGCATTTCGTGAGTATCTTGTGAAAACCTGTTATGGTGTTGTTTCTGTCACTGTGGTTGGAGACCAGGATAAACCAGCCCTAATCACTTATCCTGATCTAGCTCTAAATCAAGCTTGTTCGTTATTGCTTCACAACTTTTGCATATATCATATCAGCCCTCCTGGACATGAGTTAGGAGCTGCTGCAGTTTGCCCTGATGATCCTGTACTTTCTGCAGATGACTTAGCGGATCAAATTGCCGAAGTTCTCAACTATTTTGGACTTAGCGCTGTGATGTGTATGGGGGTTACCGCTGGAGCATACATCCTTACTCTCTTTGCTATGAAGCATAGGCATCGTGTTCATGGTTTGATATTAATCTCTCCCATATGCACAGCACCCTGTTGGACAGAATGGTTGTATAACAAGGTGATGTCAAATTTGCTTTATTTCTATGGCATGTGTGGGGTAGTGAAGGAGTTGTTGCTGAAGCGGTATTTCAGTAAGGAAGCTCGTGGTTGTTCTCAAGTACCAGAGTCTGATTTAGTTCAAGCATGCAGAAGATCGCTTGATGAGAGGCAAAGTTCAAACGTCTGGAGGTTTCTTGAAGCAATGAACGGGAGGCCCGACATTTCAGAAGGGTTGCGAAAACTGAAGTGCCGTTCATTGATATTTGTTGGGGACAGGTCTCCTTTCCATTCCGAGGCTCTCCACATGACTGTAAAACTGGACAGAAGATACAGTGCCCTTGTGGAAGTTCAGTCATGTGGGTCAATGGTGACGGAGGAGCAGCCTGATGCAATGTTGATACCTATGGAGTATTTTCTCATGGGATATGGCATGTATAGGCCATCTCATTTTAGTGTCAGCCCAAGGAGCCCCTTGAGCCCTTCTTGCATTGCTCCAGAGCTTCTGTCTCCAGAAAGTATGGGCTTGAAGTTGAAACCAATAAAAACAAGAATCTCCTTGGAAGTCTAA 1023 45.36 MGDSSDSVSVDMESISSGGKVPAFREYLVKTCYGVVSVTVVGDQDKPALITYPDLALNQACSLLLHNFCIYHISPPGHELGAAAVCPDDPVLSADDLADQIAEVLNYFGLSAVMCMGVTAGAYILTLFAMKHRHRVHGLILISPICTAPCWTEWLYNKVMSNLLYFYGMCGVVKELLLKRYFSKEARGCSQVPESDLVQACRRSLDERQSSNVWRFLEAMNGRPDISEGLRKLKCRSLIFVGDRSPFHSEALHMTVKLDRRYSALVEVQSCGSMVTEEQPDAMLIPMEYFLMGYGMYRPSHFSVSPRSPLSPSCIAPELLSPESMGLKLKPIKTRISLEV 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40724993 40728471 + Maker00025184 Lcy13g2178 652483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2178 340 Pfam Ndr family 29 298 IPR004142 -
Lcy13g2178 340 SUPERFAMILY alpha/beta-Hydrolases 44 291 IPR029058 -
Lcy13g2178 340 Gene3D alpha/beta hydrolase 20 293 IPR029058 -
Lcy13g2178 340 PANTHER N-MYC DOWNSTREAM REGULATED 10 333 IPR004142 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2178 K27696 - - csv:101217037 645.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2178 Lcy-Chr13:40724993 Lcy2g0900 Lcy-Chr2:8258015 7.23E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g66 Blo01g01473 . Bda01g00613 . . Bpe02g00482 . Bma01g02219 Cmo05g00108 Cmo12g00573 . Cma05g00101 . Car12g00581 Sed08g1762 Cpe07g00554 . Bhi04g00498 Tan02g1646 . . Hepe08g1384 . Lcy13g2178 . . . . . . . Cone4ag1654 Cone7ag1297 Cone17ag0920 Cone20ag0263 . . . . . . . . . . . . . . . . Cma12g00632 . Car05g00087 Cpe11g00081 . . . . . . . . . . . . . . . Lsi08g01576 Csa02g01844 Chy03g01639 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000907 5 5 3 4 3 2 4 2 2 1 2 2 3 2 2 4 2 7 4 2 2 2 2 2 2 2 2 4 5 3 87