Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2179 ATGTTTACTGCCCTGCAATGGAACGATTTGGGGGAAGCTTCCCGAGGTCGTTTGAGTCCCTCTGGCAATGCTGAGTTTCAAGATCAGTTAGCAAGAGCAATTCCTATTACTTCTCTTTTTCAGTCCACCTCTCTTGCTCCAGTGAACGATATTCGTGAAAATACAAAAGATTCAGCATTTTCAGACCCTCAGTTCCAGCAGTTAGAAACTTTTAGAACATGCATCTTACACAGTTCCTCTAATGCTTCAAATTCTTCATTTTCAAGTTCTCTGAACTGTGAAGGTGATGAGTCTCTATGTAATGCAAATAAGAAGTGGGAAAGCGATAGATTCCATTGTATTCAGCAACTTCCTAGGGAGAATACAGAAAGATCGGATTTCCAGACCATCTCGTTGATGGATAACCTGGATCAGAATGGCTGGATGCCACCCAACACTATGAACTCTAAGTTATGGAATGAGCTTTCTCTAAGTCTCGCCACATCCCAACCCGTTATTGTTGGAGGAGCCAATTTCCTGGACCAGTATTCACAGTTGGCTTTTTCTTGTGCTACTCAGCCTTACTTGAACAGTACAGAATTAGCCTCGAACTTGAATTCGTTCAACTCCAGGGATCTCTCTCTAAGTTATGGATGTGGTAGTCCTGTTCACCACTCTCAAGCAATAGCGGGATCAAGATATCTTTCTGTCATTCAGGACATACTTTCCCAAATTGCAAGCTATCCACTGGAAAGTTCAGATCAAGTTAGCCATTCAACAACCACAGCTGGGTTCGCTCCATTCTCATCAAGTTCCCTGGATGATGCGACAACTGAATTTGGTTCTGATGCAATTGGTAGATACAGTTCTCAAACGGAGCCTCAGTGGCAAAAACTATCTGGTGATGCCAAGAGATCCCACCTGTTGACTCTACTACAATTGATTGATGAGAGGTACACTCAATGCTTGGATGAGATTCATACCGTTACATCTGCATTTCATGCCGCCACTGATTTGGACCCTCGTTTGCATACTCGTTATACTCTCCAGACAATCACTTCTGTGTACAAAAACTTGAGGGAGAAGATAACCGATTGTGTTTTTGCTATGGGGATGCAATCTAACAAAATGTGCACCAAGGAGAAGGAAAAATCCTTCGAGGCAACGTTCATCCAGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGACCACAGAGAGGCTTGCCTGAAAAATCTGTCTCAGTTCTAAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTCATCAATGCTCGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCAGTCAAAATGAGGAGAGTTTCGGAAGAATTCATCGAACCCAGATAAACATCAGCAGCGAGAAGATGTAG 1494 42.9 MFTALQWNDLGEASRGRLSPSGNAEFQDQLARAIPITSLFQSTSLAPVNDIRENTKDSAFSDPQFQQLETFRTCILHSSSNASNSSFSSSLNCEGDESLCNANKKWESDRFHCIQQLPRENTERSDFQTISLMDNLDQNGWMPPNTMNSKLWNELSLSLATSQPVIVGGANFLDQYSQLAFSCATQPYLNSTELASNLNSFNSRDLSLSYGCGSPVHHSQAIAGSRYLSVIQDILSQIASYPLESSDQVSHSTTTAGFAPFSSSSLDDATTEFGSDAIGRYSSQTEPQWQKLSGDAKRSHLLTLLQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYKNLREKITDCVFAMGMQSNKMCTKEKEKSFEATFIQKQWALQQLKRKDNQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSSQNEESFGRIHRTQINISSEKM 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40728928 40734580 - Maker00025173 Lcy13g2179 652484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2179 497 SUPERFAMILY Homeodomain-like 402 470 IPR009057 -
Lcy13g2179 497 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 186 476 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy13g2179 497 CDD homeodomain 401 462 IPR001356 GO:0003677(InterPro)
Lcy13g2179 497 Pfam Homeobox KN domain 418 457 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy13g2179 497 SMART HOX_1 401 465 IPR001356 GO:0003677(InterPro)
Lcy13g2179 497 Pfam Associated with HOX 222 357 IPR006563 -
Lcy13g2179 497 SMART prehox3 216 358 IPR006563 -
Lcy13g2179 497 Gene3D - 395 476 - -
Lcy13g2179 497 ProSiteProfiles 'Homeobox' domain profile. 398 461 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2179 Lcy-Chr13:40728928 Lcy8g1151 Lcy-Chr8:37816424 6.35E-37 dispersed
Lcy13g2179 Lcy-Chr13:40728928 Lcy5g0494 Lcy-Chr5:5337893 2.81E-39 transposed
Lcy13g2179 Lcy-Chr13:40728928 Lcy5g2617 Lcy-Chr5:48927227 2.81E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19456 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2179 - - - 0.0