Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2180 ATGTTGGGTAATCTTCACTCTTGCGAGCAGTGGGAGACAAGTAAAGTGACGTGGTTAGGTCACAAGGATGCAGGAGAATGCCAGGACTATAAAGAGAAGCTTAAAGGGAAATTTAAGCTTTTTGGAGTTCAACTTGTTGATGGAGCTTCATCTGCAGCAGCAGCCTTGTTGAAGAAAAGCATCAGCTTGGATTCTTTGCCTTCTTCTTCTACACCTTCCTCTTCTTCTTCCTCTGAGAAATTCTCAAGTGGGTATCTCTCAGATGGCCTCATCACCAAAACCCATGAAAGGAAAAAGGGTGTGCCATGGAGTGAAGAGGAGCATAGAGTGTTTTTAGTTGGGCTACAAAAGCTTGGAAAAGGAGATTGGAGAGGAATCTCAAGAAAATTTGTTACCACAAGAACTCCGACCCAAGTGGCTAGCCATGCGCAAAAGTACTTTCTTCGACTCGACAGCCTCAACAAAAGAAAACAGCGCCGCCCCAGCCTTTTTGATGCTGCTACAAGGGACAAATTCACAGTGCAAGTGGTTGAATGCAACAATTCCAAACCAACCAAGCTGCCTTGTTCTTCATCCATTTGCTTTGGGATTATTCCATCAAATTCAACTCCAATAATTAACAAAAATAATAATAATATTAGCAAATCAAATCATAAAAATTCATTGCCCATTTGGTTTGGTACTGAAGAATCTCAGCCATTGAAGTTTCTTGAAAACCCCATGAAATCTTCAAGCTCAGCCATTGATTTGCAGCTAAGTTTGTCCACTCCAAAGCCAGTAGTAGAACAAGCTCAGCCAGCTTGCTGCAGAACCATGCCCATTAATGGAGCCATTTCAGTCACATGA 846 42.2 MLGNLHSCEQWETSKVTWLGHKDAGECQDYKEKLKGKFKLFGVQLVDGASSAAAALLKKSISLDSLPSSSTPSSSSSSEKFSSGYLSDGLITKTHERKKGVPWSEEEHRVFLVGLQKLGKGDWRGISRKFVTTRTPTQVASHAQKYFLRLDSLNKRKQRRPSLFDAATRDKFTVQVVECNNSKPTKLPCSSSICFGIIPSNSTPIINKNNNNISKSNHKNSLPIWFGTEESQPLKFLENPMKSSSSAIDLQLSLSTPKPVVEQAQPACCRTMPINGAISVT 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40743513 40746836 + Maker00025355 Lcy13g2180 652485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2180 281 Gene3D - 101 153 - -
Lcy13g2180 281 Pfam Myb-like DNA-binding domain 101 147 IPR001005 -
Lcy13g2180 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Lcy13g2180 281 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Lcy13g2180 281 SMART sant 99 149 IPR001005 -
Lcy13g2180 281 FunFam transcription factor MYB1R1 101 152 - -
Lcy13g2180 281 MobiDBLite consensus disorder prediction 64 84 - -
Lcy13g2180 281 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677(InterPro)
Lcy13g2180 281 CDD SANT 102 147 IPR001005 -
Lcy13g2180 281 SUPERFAMILY Homeodomain-like 96 152 IPR009057 -
Lcy13g2180 281 PANTHER TRANSCRIPTION FACTOR KUA1 28 218 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2180 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2180 Lcy-Chr13:40743513 Lcy6g0315 Lcy-Chr6:2975280 9.05E-36 dispersed
Lcy13g2180 Lcy-Chr13:40743513 Lcy2g0906 Lcy-Chr2:8310911 1.61E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g70 . . . . . . . . . Cmo12g00575 . . . Car12g00583 Sed08g1764 Cpe07g00556 . Bhi04g00508 Tan02g1642 Cmetu03g2033 . Hepe08g1387 . Lcy13g2180 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00635 . . . . . . . . . . . . . . . . . . Lsi08g01578 Csa02g01841 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001505 1 4 1 4 4 2 3 2 2 1 2 2 3 2 2 3 2 4 3 2 2 3 2 2 2 2 2 4 2 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19457 None None None None Lcy TF