Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2181 ATGGATAGGATAAGGCAATCCCTAACCCAAGCAAACGTCCCCAAATCTAGAGCCATTCGCCTTACTCTCGCTCCCCTGCGTTCCTCCATCACCACTTTCCTCCCATTCTCATTCTTTCGAAGGAGAGAGGCACCCCTCTCCAAAGCTATCACTCTGGCACTTTTCTTTGATATTGTTGAAACGGTAGCCCAGTTTGGTGTAATTTTTCTTCTTTTTGCACTAGGGTTGGAGTTTTCAACAACTAAGCTTCGAGTTGTTCGAGCAGTTGCTGTTCTTGGTGGTCTGCTCCAAATTTTCCTATTTATGTGCCTTAGTGGGATCACAGCCTCGTCATGTGGTGGGAGTGCTTCTGAAGGAGTTTTTGTTGGAGCTTTCTTATCAATGTCCTCAACAGCAGTGGTGCTGAAGTTTTTGATGGAAAAGAACTCAGCAAATGCTCTTCATGGACAAGTCACGATTGGCACCCTTATCTTGCAGGACTGTGCTGTTGGGTTACTGTTTGCTTTGCTTCCAGTCCTGGGTGGGAATTCTGGTATTCTTCAAGGAGTGATATCCATGAGTAAAGTGTTGGTGACCTTGGTTACTTTTTTGGTTGTTTTGTCAATTTTATCCCGTACATGTATTCCTTGGCTTTTAAAGTTGATGATAAGTCTATCATCACAGACCAACGAACTCTATCAATTAGCCTCAGTGGCATTCTGCTTACTCGTAGCATGGTGTAGTGATAAGTTAGGGCTAAGTTTAGAATTGGGTTCCTTTGCTGCTGGAGTGATGATATCGACAACTGATCTTGCTCAACATACACTCGAACAAATAGAGCCTATACGGAACTTTTTTGCTGCACTTTTTCTTGCCAGCATTGGAATGCTGATCCACGTTCAGTTTTTGTGGAACCATGTGGATATATTACTGGCAGCTGTTATACTGGTGATAATTGTAAAAACAATTGTAATTAGTACAGTGGTGAAGGGATTTGGATACAACAACAGGACATCACTTCTGGTCGGAATGTCTCTGGCTCAGATAGGGGAATTTGCTTTTGTTCTTCTCAGCCGTGCTTCTAATCTTCATCTAGTTGAGATCCTTAGAGATAGGGCATTTGGGGCAAGGTTCAGAAAGGAACTTAAGTTTGGTAGTGGGGAAACTGTATCTGTTGCTTATTGGGACCACAGCTCTCAGTCTGGACCAATTCCTTCCCAGATCAATCCAGAGCCAAGACTCTTCTCTTTTCATGAAAGGCTAAGGAGGCAGATGCGACAGAAAAATGCCTCCATATGTAATGGGAGTGCAGAGGTCTCTGTGCGAGACATATTCACCGTTGAGTGCAAAGGCACAAAGGAGTTTGAAAGCGAAGGCCCACTGGTGACAACTCCTCTTCTTTTCAAGCTGATACCTGCTGTAGTGCATTTAGGCGTACTATTGCGGTGGTTCTCCCCAGACAGTCTAGTTGAGATTGGATTTAAAGGAGACATCATCCGCTCAGACAGTGTAAAGCAGCGTGTTATGTTGATAGTCCAAGGACCTCATGATTCATGA 1536 43.95 MDRIRQSLTQANVPKSRAIRLTLAPLRSSITTFLPFSFFRRREAPLSKAITLALFFDIVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMCLSGITASSCGGSASEGVFVGAFLSMSSTAVVLKFLMEKNSANALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGILQGVISMSKVLVTLVTFLVVLSILSRTCIPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNFFAALFLASIGMLIHVQFLWNHVDILLAAVILVIIVKTIVISTVVKGFGYNNRTSLLVGMSLAQIGEFAFVLLSRASNLHLVEILRDRAFGARFRKELKFGSGETVSVAYWDHSSQSGPIPSQINPEPRLFSFHERLRRQMRQKNASICNGSAEVSVRDIFTVECKGTKEFESEGPLVTTPLLFKLIPAVVHLGVLLRWFSPDSLVEIGFKGDIIRSDSVKQRVMLIVQGPHDS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40751237 40759515 - Maker00025245 Lcy13g2181 652486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2181 511 Pfam Sodium/hydrogen exchanger family 57 359 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lcy13g2181 511 Gene3D - 45 367 IPR038770 -
Lcy13g2181 511 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 59 360 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2181 Lcy-Chr13:40751237 Lcy6g0227 Lcy-Chr6:2049188 2.59E-139 dispersed
Lcy13g2181 Lcy-Chr13:40751237 Lcy2g0907 Lcy-Chr2:8317292 5.46E-164 wgd
Lcy13g2181 Lcy-Chr13:40751237 Lcy4g0123 Lcy-Chr4:1627379 1.20E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2181 K26735 - csv:101217282 521.931