Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2186 ATGTTCTTCTTCGAGGATTTCTGGCAGATGCTCTGTATTCAAGGCTTCCGGGATAGAACTCGACTTCTCTCTGAGTCCCTTATACGGACCGTATCCGAATCCATGGGCAATTCGTCCTGTGGCGCCTCCGAGTTAGAACTCTGTCGAAACGACTCCGCTGCGCTTAATTTCAAATTAATCGCAATCGCCTCGATTCTCACATCGGGAGTCGTCGGAATCGTCATTCCGTTGTTCGGCAGACATCGCCGGTTCCTCAAGACCGACGGCAACCTGTTCGTGGCGGCGAAGGCTTTCGCCGCGGGGGTGATTCTGGCCACCGCGTTCGTCCACATGCTCCCCGACGGATCGAAAGCTCTGTCCGATCCGTGCTTGCCGGAATTCCCCTGGTCGAAATTCCCCTTCTCTGGATTCTTCGCGATGATGGCTTCGCTGCTGACGCTCCTCGTCGATTTCGTCGGAACTCAGTACTACGAGCGGAAACAGGGGCTGATTCGATCGAAAGAGGAAGCTAGTCGGGTCGGGTCGGAGGTGGATTCCGGATTGGAATCCGGCATCCTCCCGGCCGCCGATTCGAACGCGAAAGTGTTCGGCGAAGAGGACGGCGGCGCGATGCACATCGTCGGAATCCATGCGCACGCGGCGCACCACCGGCACAGTCATCCGCAGGGGAAGGAGGCGTGTGACGGGCATGTGACACTCCATGACCATGGCCATGCCCATGGACATGGGCATTCTCATGGGCTCGACGGCGACGATGACGAAAGCGGTGTACGACATGTCGTTGTTTCCCAGATTTTGGAGCTTGGAATAGTGTCACATTCAGTGATAATTGGGCTGTCTCTGGGAGTGTCCCACAGCCCATGCACCATTAGACCCTTAATTGCAGCCCTCTCCTTCCATCAGTTCTTTGAAGGCTTTGCCTTGGGAGGCTGCATTTCTCAGGCTCAGTTCAACACCCTCTCCACCTCCCTCATGGCTGCCTTCTTCGCCATCACCACGCCCGTCGGGATCGCCATCGGCGCTGCGGTCTCCTCCACCTACAACCCCAACAGCACCGGGGCCTTGGTTGCTGAGGGCATTTTGGACTCTCTCTCGGCCGGAATTCTCGTCTATATGGCTCTGGTTGATTTGATCGCGGCCGACTTTCTTAGCAAGAGAATGAGCTGCAATTTCAGACTCCAAATTGTTTCGTATTGTACGCTATTTCTCGGCGCGGGATTGATGTCGTCGCTCGCGCTTTGGGCTTGA 1248 56.17 MFFFEDFWQMLCIQGFRDRTRLLSESLIRTVSESMGNSSCGASELELCRNDSAALNFKLIAIASILTSGVVGIVIPLFGRHRRFLKTDGNLFVAAKAFAAGVILATAFVHMLPDGSKALSDPCLPEFPWSKFPFSGFFAMMASLLTLLVDFVGTQYYERKQGLIRSKEEASRVGSEVDSGLESGILPAADSNAKVFGEEDGGAMHIVGIHAHAAHHRHSHPQGKEACDGHVTLHDHGHAHGHGHSHGLDGDDDESGVRHVVVSQILELGIVSHSVIIGLSLGVSHSPCTIRPLIAALSFHQFFEGFALGGCISQAQFNTLSTSLMAAFFAITTPVGIAIGAAVSSTYNPNSTGALVAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCTLFLGAGLMSSLALWA 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40808162 40811724 - Maker00025427 Lcy13g2186 652491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2186 415 NCBIfam ZIP zinc/iron transport family 40 415 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Lcy13g2186 415 MobiDBLite consensus disorder prediction 232 253 - -
Lcy13g2186 415 Pfam ZIP Zinc transporter 56 412 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lcy13g2186 415 PANTHER ZINC/IRON TRANSPORTER 52 414 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2186 Lcy-Chr13:40808162 Lcy9g1445 Lcy-Chr9:39486126 6.07E-93 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2186 K14709 - csv:101218224 696.427