Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2195 ATGGCTGGTATGGCACCTGAAGGAACGCAGTTTGATGCACGTCAATATGATTCTAAGATGAATGATTTACTTGGAGGAGATGGCCAAGATTTTTTCACCTCATATGATGAAGTCTATGAAAGTTTTGATTCCATGGGTTTGCAGGAGAACCTCTTGAGAGGAATATACGCTTATGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGGGGTATTGTTCCTTTCTGTAAGGGACTTGATGTAATCCAACAGGCACAATCTGGAACTGGAAAAACTGCTACTTTCTGCTCTGGAATTTTGCAGCAGCTGGATTATGGGCTAGTTGATTGCCAGTCATTAGTTCTTGCTCCCACCCGAGAACTGGCACAACAGATCGAGAAGGTTATGCGTGCATTAGGTGATTATCTTGGTGTCAAGGTTCATGCTTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAACGCATTCTCTCAAGTGGTGTTCATGTTGTTGTTGGTACCCCTGGTCGTGTGTTTGATATGCTGCGGAGGCAGTCACTTCGCCCTGATCACATTAAGATGTTTGTGCTGGATGAAGCTGATGAAATGCTTTCACGAGGGTTTAAGGATCAGATCTATGATATTTTCCAGCTTCTTCCACCAAAAATTCAGTTTCGATCTGGTTCATCCCGTGTTCTCATTACTACTGATCTCTTGGCCAGAGGAATCGATGTCCAACAAGTTTCCCTTGTAATAAATTATGATCTTCCTACTCAGCCAGAGAATTACCTCCATCGAATTGGTCGAAGTGGACGATTTGGAAGGAAGGGTGTTGCCATCAATTTCGTCACCACAGAGGATGAAAGGATGCTGTTTGACATCCAAAAGTTCTACAATGTCGTGGTTGAGGAGCTGCCAGCAAATGTTGCTGACCTCATTTGA 915 43.93 MAGMAPEGTQFDARQYDSKMNDLLGGDGQDFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVVEELPANVADLI 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40870732 40874009 - Maker00025281 Lcy13g2195 652500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2195 304 CDD SF2_C_DEAD 215 274 - -
Lcy13g2195 304 CDD DEADc_EIF4A 45 216 - -
Lcy13g2195 304 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Lcy13g2195 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 300 IPR027417 -
Lcy13g2195 304 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Lcy13g2195 304 Pfam DEAD/DEAH box helicase 65 216 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lcy13g2195 304 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 101 304 IPR001650 -
Lcy13g2195 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 216 IPR027417 -
Lcy13g2195 304 SMART helicmild6 189 265 IPR001650 -
Lcy13g2195 304 FunFam Eukaryotic initiation factor 4A-II 28 233 - -
Lcy13g2195 304 SMART ultradead3 59 237 IPR014001 -
Lcy13g2195 304 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 215 290 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Lcy13g2195 304 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 248 IPR014001 -
Lcy13g2195 304 Gene3D - 27 231 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0134 Lcy-Chr13:1298270 Lcy13g2195 Lcy-Chr13:40870732 1.03E-192 dispersed
Lcy13g2195 Lcy-Chr13:40870732 Lcy2g2408 Lcy-Chr2:50792080 9.14E-32 dispersed
Lcy12g0401 Lcy-Chr12:4901404 Lcy13g2195 Lcy-Chr13:40870732 6.50E-102 transposed
Lcy13g1788 Lcy-Chr13:36859274 Lcy13g2195 Lcy-Chr13:40870732 5.57E-23 transposed
Lcy13g2195 Lcy-Chr13:40870732 Lcy3g2226 Lcy-Chr3:49077602 9.90E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2195 K03257 - vvi:100249159 412.535