Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2196 ATGTCTCCCTCCTCGTATCCACCTGAAGATGGGATCCCCTTGAACACCACGGCGGTCGCCATTGACAAGGATAAGAACAGCCATCACTCCGTCCGGTGGGCTATCGATCATCTGGTCATAAGCAACCCGCTTATCATTCTCATCCATGTCAGGCATAAATCTAATCAACATCAGGGCGCGAGCGATTCTGAAACTGGGGAAACTGATGCCCAGCAGCTGTTTATTCCCTACCGTGGATATTGTGCTCGTAAAGGGATTGTTATTGCAAGCGTTCTTAGGAAACTTGTATTCGAAATGATTGAATCATGGCCTTATATGCTTGTTCAGCTGAAGGAGGTTGTTCTTGATGATACTGATATTCCCAAAGCACTTGTCGATTACGTTCACAAGAATTGCATCAACAATTTTGTAGTCGGAGCTTCAACAAGGAGTGCTTTAGCAAGGAAATTTAAAGGACCTGATGTTCCAACCAGCGTAATAAAAACTGCCCCGGATTTTTGTTCTGTGTATGTAATATCAAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCCGTGGCTAATACTGCCATGCCACCAAGACAACCACCATCACCGATTGCAGTTAAGCCAAGTTCTCAACCAGACAACAACAACGAACAAGAAAATGCAGCCAAAGGGCAACCACCAAGGGAAGGATGGAAAAGTGCGGGTTCAGACAAAATACTCAATGAAAGGAATGGTGGAAAACCAGCAAAAGCATTGACCCGTGAGAGGCCAAAAACTTCTCCAACTAATATAACATTGGAAAATGTAGAGGCTCCTAATCGGGGATCTAGGTCTTCATTTAGCCGTGAGTCGATCTCTGATGATAATACGTTGAATGCACAGATGGCTTTTGGTTCAATGGATGTGAGTGGTCAAAATTTAGATTTTAGTATTAGCTCAAATGCGTCAACCGATTCTGCTTCTACACAATCTACTCGAGAACTAGAGGCTGAGATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCTAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTTGAGGAAGTCAGGCTAGCTGAAGAGGCTGCTCTTGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATGAAGGCCAGACGAGAGGCCGAAGAGAAAAAACGAGCACTGAGTGCTCTAGCTCAGAATGACGTCCGATATAGAAAATATACCATAGAGGAAATTGAGGAATCTACTGAAAAGTTCTCTGAAAAATTGAAAATTGGAGAAGGTGGATACGGTCCTGTTTATGGAGGCAAACTTGATCATACAGCTGTTGCGATTAAAGTTTTAAGACCTGACGCTGCTCAAGGACGAAAGCAATTCCAACAAGAGGTGGAGGTTCTTTGTTGCATTAGACATCCAAACATGGTCCTGCTTCTTGGGGCGTGCCCCGAGTATGGCTGCTTGGTATACGAATACATGCATAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATAGTCCTCCATTATCTTGGAGACGAAGATTCAAAATAGCTGCTGAAATTGCAACCGCACTCCTTTTTCTTCACCAAGCAAAGCCAGAACCACTTGTGCATAGGGACCTTAAACCAGCTAACATTCTCTTGGACCGCAATTATGTGAGCAAAATCAGTGATGTTGGCTTGGCCCGATTAGTCCCACCTTCTGTAGTTGATCAAGTCACCCAATATCACCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCTGAGTACCAGCAAACAGGAAAGTTAACAACAAAATCAGATATTTACTCATTCGGAATTATGTTACTTCAAATTATCACTGCCAAGCCTCCAATGGGTCTGGCTCACCATGTGCAAAGGGCCATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTTCAGATTGTCCATTGGAGGAGGCTATAAATTTTTCAAAACTGGCATTGAAGTGCGCTGAACTGAGGAAGAGAGACAGGCCAGATCTTGGAACAGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGGAGGAGTTCTGACAAACGTGAGAGCCGGAATCACTTTCCCCGCTCTTCCGCATCAAGTTCCAGTTCGAGGCCACAGTCATCAAATGAGCTGGTTGATGGGTCTCACTTCTGCAGGGTTGATTTAGAGCTTAAGTGGACTGATTCTGTTGAGAGTTTTGTGAATTTGGTTGTGAGACTGCCCTTGTCCCAAGGAATTTCCAGGAAGGAATTGAGGAGCCCAGGTTTGGAAGAAAAGTATAAAGGAAACAAGAACAAAAGGATTAAAGTGCAGGAAGTATACAAGGAGATGGGAATCCATATAAAGGTTGATTATGTTTTGAGAAAGTGCAAAAGGCAAACTCATAAGTCTCCTTCTCCACTTCAACTCCCACTTCTTATTCATCACAAAGCTTCCTCCTTTCTGCAACTTCAACATATAACTTCATCCATTTCCATGGAACCTTTCACTAAAACCTTCCATTTCTCTTCCCTCTTCTTCATTCTTCTCATCTTCCACCTCGCCGGAGCCGCAGCGCCGTCCGAAGACCACCATCTGATCGAGGTGGTGCCTCCGGTAAGCCTTCTCTGTATCAGCGAATGTTCAACTTGCCCTGTCATATGCGCACCGCCGCCGCCGCCCACGGCGGCGCTCAAGTCACCTCCGCCGGTACCCCACTCTCCGCCGCTGGCTTACTTCCCGCTCAACTCACCCCCACCCCCATCCCCACCTCGACCAACCCCATCGCCCCCACCGCCATCGCCGGCGGTGGCTTCATCTCATCCTCCACCGCCTCCCGCTTTCAAATATTATTTCAGCCTTCCACCACCGCCGCCGGTGCTGATTCCGGTGCCTGTGCCGCCGACGACGGCTGCGCCTCACGGAAATACCAATGCTTATAATTACTACTTTTACGCTTCGAAATCGTCTTCTCTGTCTTTTCCGGCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGCGTTGTCTTGA 3147 46.36 MSPSSYPPEDGIPLNTTAVAIDKDKNSHHSVRWAIDHLVISNPLIILIHVRHKSNQHQGASDSETGETDAQQLFIPYRGYCARKGIVIASVLRKLVFEMIESWPYMLVQLKEVVLDDTDIPKALVDYVHKNCINNFVVGASTRSALARKFKGPDVPTSVIKTAPDFCSVYVISKGKIISARAALRPVANTAMPPRQPPSPIAVKPSSQPDNNNEQENAAKGQPPREGWKSAGSDKILNERNGGKPAKALTRERPKTSPTNITLENVEAPNRGSRSSFSRESISDDNTLNAQMAFGSMDVSGQNLDFSISSNASTDSASTQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARREAEEKKRALSALAQNDVRYRKYTIEEIEESTEKFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNSPPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVVDQVTQYHLTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFDEMLDPTISDCPLEEAINFSKLALKCAELRKRDRPDLGTVIVPELNRLRDIGRSSDKRESRNHFPRSSASSSSSRPQSSNELVDGSHFCRVDLELKWTDSVESFVNLVVRLPLSQGISRKELRSPGLEEKYKGNKNKRIKVQEVYKEMGIHIKVDYVLRKCKRQTHKSPSPLQLPLLIHHKASSFLQLQHITSSISMEPFTKTFHFSSLFFILLIFHLAGAAAPSEDHHLIEVVPPVSLLCISECSTCPVICAPPPPPTAALKSPPPVPHSPPLAYFPLNSPPPPSPPRPTPSPPPPSPAVASSHPPPPPAFKYYFSLPPPPPVLIPVPVPPTTAAPHGNTNAYNYYFYASKSSSLSFPAAFLWALFLFHLALS 1048
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40882590 40889055 - Maker00025299 Lcy13g2196 652501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2196 1048 MobiDBLite consensus disorder prediction 253 282 - -
Lcy13g2196 1048 MobiDBLite consensus disorder prediction 739 756 - -
Lcy13g2196 1048 CDD STK_N 16 175 - -
Lcy13g2196 1048 Gene3D Transferase(Phosphotransferase) domain 1 529 744 - -
Lcy13g2196 1048 PANTHER OS02G0152300 PROTEIN 18 738 IPR051348 -
Lcy13g2196 1048 MobiDBLite consensus disorder prediction 205 219 - -
Lcy13g2196 1048 CDD STKc_IRAK 462 722 - -
Lcy13g2196 1048 Coils Coil 322 342 - -
Lcy13g2196 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g2196 1048 MobiDBLite consensus disorder prediction 726 756 - -
Lcy13g2196 1048 Pfam Protein tyrosine and serine/threonine kinase 460 714 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g2196 1048 ProSiteProfiles Protein kinase domain profile. 456 719 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2196 1048 MobiDBLite consensus disorder prediction 189 282 - -
Lcy13g2196 1048 Coils Coil 382 437 - -
Lcy13g2196 1048 Gene3D Phosphorylase Kinase; domain 1 425 528 - -
Lcy13g2196 1048 Gene3D HUPs 15 172 IPR014729 -
Lcy13g2196 1048 SUPERFAMILY Protein kinase-like (PK-like) 438 714 IPR011009 -
Lcy13g2196 1048 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 429 528 - -
Lcy13g2196 1048 SMART serkin_6 456 719 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2196 1048 MobiDBLite consensus disorder prediction 953 979 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2196 Lcy-Chr13:40882590 Lcy4g1566 Lcy-Chr4:39577499 5.50E-213 dispersed
Lcy13g2196 Lcy-Chr13:40882590 Lcy3g2227 Lcy-Chr3:49084957 3.58E-217 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65592 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2196 - - - 0.0