Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2197 ATGGAGGAAATGTCCCCAGCGGTTGTGGTGCCATTTAGGGTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAACTCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTAACTAAGGCTTCTGACAATCCGACTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGATTAGTATTACTACAGTTTCGGTTATGAACGATGACAAGTGCGAAGGGGTTCCGTTGACGGTCGTGTTGTCTCAAAATAATAGCAATTGGGTTGCAGCGGATGAGACGATATCTCATGGAAGTGAGGAAGATGATTCTTTATCTTTTGAGGGTGATCATATTTATGACAGCTCTTGTTCGCATTCAGTGGTTAGTGAGACTAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCTTCTTTTGAAGCATTTGGTTCCATCAGCAATGCGAAGGACGTTAGCAGCGTTGAGATTGCAGCTACAGCCAATCTTGGAGAGTCTAATGTTGAAAGTCTTGAGTCTCAGATTGCAAGTTCTTCTTCTGTAGCAGTTAGCCTCGAAGAAGATGTTGGAGATGGCTTAGGCGTTGAAGCATGTAACATGGTTCTCCAGCTACCTCTTGAGAAAAGAGCATGTGAACCGGTCAGTCGAAGTGTTTTTGAGGTAGATTGTGTTCCCCTTTGGGGATATACGTCGGTCTGTGGAAGAAGACCTGAGATGGAAGATGCAGTAGCAACTGTACCCAGGTTTTCAGAACTTCCTATCCAAATGCTTATTGGCAACCGAGTTCTTGATGGCTCAAGCAAGGCTGTAGCTCACCAAACTGTTCATTTCTTTGGAGTTTATGATGGTCATGGTGGCTCTCAGGTCGCAAATTTTTGTCGTGAACGTATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAACAAGATATAGCTGCTGGCAATATGAAGGATAATTGCCAAGAGCTATGGAGAAAGGCATTCACCAAATGTTTTCTAAAAGTTGATGCTGAAATTGGAGGGAGACCTGGTGTTGAGCCTGTTGCGCCCGAAACCGTAGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAGGAGCCAATGGCATTGTCCGTGGATCACAAACCAAATAGAGAAGATGAATATGAAAGGATTGAGGCTGCAGGAGGAAAGGTCATACAGTGGAACGGACACCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATCGGTGATAGATACTTGAAACCATGGATTATCCCAGAGCCAGAAGTGATGTTCATCCCTCGGGCGAAAGACGACGATTGCCTCATTCTAGCCAGTGATGGTCTGTGGGATGTGATGACGAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTACTCTGGCACAAGAAGAACGGCGTTCCTTCGCCGTCCGAGAGGGGGATGGGGATCGATCCTGCAGCCCAAGCAGCTGCAGAATACCTCTCAAACCGAGCTCTTCAAAAGGGCAGCAAAGACAACATCACAGTAATCGTGATCGATTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCATAA 1662 45.25 MEEMSPAVVVPFRVGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDNPTEVGSDDCKSSNGEEEISITTVSVMNDDKCEGVPLTVVLSQNNSNWVAADETISHGSEEDDSLSFEGDHIYDSSCSHSVVSETSSICGDDFLGSEVSSFEAFGSISNAKDVSSVEIAATANLGESNVESLESQIASSSSVAVSLEEDVGDGLGVEACNMVLQLPLEKRACEPVSRSVFEVDCVPLWGYTSVCGRRPEMEDAVATVPRFSELPIQMLIGNRVLDGSSKAVAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKQDIAAGNMKDNCQELWRKAFTKCFLKVDAEIGGRPGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFIPRAKDDDCLILASDGLWDVMTNEEVCDLARRRILLWHKKNGVPSPSERGMGIDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKAQRKFKTKS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40895327 40900163 + Maker00025324 Lcy13g2197 652502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2197 553 Pfam Protein phosphatase 2C 260 536 IPR001932 -
Lcy13g2197 553 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169(InterPro)
Lcy13g2197 553 PANTHER PROTEIN PHOSPHATASE 189 542 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
Lcy13g2197 553 Gene3D - 226 553 IPR036457 -
Lcy13g2197 553 CDD PP2Cc 241 543 IPR001932 -
Lcy13g2197 553 MobiDBLite consensus disorder prediction 46 61 - -
Lcy13g2197 553 SUPERFAMILY PP2C-like 234 544 IPR036457 -
Lcy13g2197 553 SMART PP2C_4 229 541 IPR001932 -
Lcy13g2197 553 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
Lcy13g2197 553 MobiDBLite consensus disorder prediction 46 66 - -
Lcy13g2197 553 FunFam Protein phosphatase 2C 16 227 553 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2197 Lcy-Chr13:40895327 Lcy6g0081 Lcy-Chr6:773112 2.20E-71 dispersed
Lcy13g2197 Lcy-Chr13:40895327 Lcy13g0137 Lcy-Chr13:1323540 3.15E-183 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2197 K14497 - csv:101207918 989.949