Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2200 ATGTCTTACAACAGTAACCAGAACCTCACTACGTCGGAGAGCGATCTTGCCGAGCAGCCCGGCTTCGAATTTACGGACTGGATGTTCGATGGATGGCTCAATGAAAACTCTTCGTCGCCTCTGACCGACTCAGTGATGTACCCGGTTTATCAATCGGGCGAGGTTGCTGATGAGTTTGTTGGGAACACCATACACCAAGGAGAGCCTAGCAGTATAGGAGACAGTGGGAATAATGGGAGAGAGAGGGAAGTTAGAGAAAGATTTGCATTCAAGACAAAATCAGAAGTTGAGATTCTGGATGATGGGTTCAAGTGGAGGAAGTATGGGAAGAAGATGGTGAAAAACAGCCCAAATCCAAGGAACTACTACAAATGCTCGGTCGAAGGCTGCCCGGTGAAGAAGAGAGTCGAAAGAGATCGAGAGGATCCGAAATATGTGATAACGACGTACGAGGGTGTCCATACCCATGAAAGTTCTTGA 480 47.5 MSYNSNQNLTTSESDLAEQPGFEFTDWMFDGWLNENSSSPLTDSVMYPVYQSGEVADEFVGNTIHQGEPSSIGDSGNNGREREVRERFAFKTKSEVEILDDGFKWRKYGKKMVKNSPNPRNYYKCSVEGCPVKKRVERDREDPKYVITTYEGVHTHESS 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40909480 40910584 - Maker00025180 Lcy13g2200 652505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2200 159 Pfam WRKY DNA -binding domain 100 157 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g2200 159 SMART WRKY_cls 99 158 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g2200 159 Gene3D WRKY domain 86 152 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g2200 159 SUPERFAMILY WRKY DNA-binding domain 92 157 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g2200 159 ProSiteProfiles WRKY domain profile. 94 159 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy13g2200 159 FunFam WRKY transcription factor 57 85 159 - -
Lcy13g2200 159 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 157 IPR044810 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2200 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2200 Lcy-Chr13:40909480 Lcy1g1097 Lcy-Chr1:9997992 8.67E-30 dispersed
Lcy13g2200 Lcy-Chr13:40909480 Lcy12g0862 Lcy-Chr12:11979788 3.62E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g123 . . . . . . . . Cmo05g00435 . . Cma05g00418 . Car12g00603 Sed11g0865 Cpe07g00570 . Bhi04g01492 Tan02g1607 Cmetu03g0494 . Hepe08g1410 . Lcy13g2200 . . . . . . . . . Cone17ag0938 Cone20ag0281 . . . . . . . Bda13g01591 Bpe14g00273 . . . . . . . Cma12g00655 . Car05g00356 . . . . . . . . . Cla08g01001 Cam08g1451 Cec08g1027 Cco08g1151 Clacu08g1152 . Cre08g0937 Lsi08g00852 . Chy03g00670 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001629 2 5 0 0 2 2 3 2 2 2 2 2 3 2 2 3 2 3 4 2 2 2 2 2 1 2 2 3 5 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19460 None None None None Lcy TF