Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2203 ATGACAGACAGTGGGAGAGACAAGCTTCATGAAGCCGCCATTGAAGGCAATGTAACAACGTTGTTAGAGTTGCTCCAACGAGATCCGTTGCTACTGGACAGAGTTAACGATTCCAATGAGACTCCTCTGCACATGGCTGCTCTACTTGGGCACGTGAGATTTGTGGATGAGATTCTGAAGCGAAGGCCTCAGCTGGCCAGAGAGTTGGATTTTCGTGGATCTTCGGCTCTTCACTTGGCGGCGGCCAAAGGGTTCGTGGAAATAGTGAAGCTTTTTCTGCAAGTTGATGCTGATTTGTGCTTATTGTGGGACGCCGATGGGCGGAACCCTCTCCACCTCGCCGCCGTGAGAGGCCGAGTTGATGTGTTGGCTGAGCTCCTCAGAGCCAAACCAGTGGCCGCTCGAACTGCCGTGGAGGGCGGCGGAACGGTGTTGCATTTATGTGTGAAGTACAACCAGTTGGAGGCTCTGAAGATGTTGATTGGAACTGTGACAGCTAATAATGACAGTTTGGTTAATGCTAAGGATGATTATGGCTTCACAATCCTCCATTTAGCCGTCTCCAACAAACAGCTTAGGACAGTGGAATATTTAATCAACAACACTGGAATCAAAGTTAATGCTTTAACCTCAAATGGGTTAACAGCTCTAGACATTCTCATTCAAAGCCACAGGGATTTAAAGGACATGGACATTTCACATACCCTCACAGCCGCCGGAGCCTTCCAAACCGCCACAAACAGAAAACCGTCACCACCACCTCCACCACCACCACCACCACCACCATTTTCTTCTCTCCACGAACTCCGAATAACCGATATCTTCCGTCGGGTCATATCGGCCATTTTCGGCAACAAAAAAGAATCCTGGTTTTTGATGAGGCAAGATGCATTACTTGTAGCAGCATCGCTGATTGCAACAGTGGCTTTTCAAACCGGGGTGACCCCTCCCGGCGGCGTATGGCAAGACGATAATCCGGCCATGAATCGAACGGCGGGAACATCAGTAATGGCTGAAAAGCAGCTGGCTACTTATAATAAGTTCCTTGCGTTTAACACGACGGGATTCACGGCTTCGCTGATCGTGATTTTGATGCTCGTCACTGGGTTGCCCTCTAGACATGTCGTTTTTGTTAGGATTCCTGTAGTTGCTATGTGGGTTGCAGTGTGGTACATGGCTTTCACTTATTTTTACTCCATCAAATTCCTCACTCCCAAACACTTCGACTCCATCATCATTAACATTGTCATTGCCGTCTCCGTTGTGGCTTCTGCTTCCTTCGTTGTGTTCTTCCTCGTCAAGCTCTTCTTCGCTCTTTCTCATCCGGATCGGAAGCTCAATACCCTTTCAAGGAAACCAACCACAGACCAAGACCCTTGA 1380 48.62 MTDSGRDKLHEAAIEGNVTTLLELLQRDPLLLDRVNDSNETPLHMAALLGHVRFVDEILKRRPQLARELDFRGSSALHLAAAKGFVEIVKLFLQVDADLCLLWDADGRNPLHLAAVRGRVDVLAELLRAKPVAARTAVEGGGTVLHLCVKYNQLEALKMLIGTVTANNDSLVNAKDDYGFTILHLAVSNKQLRTVEYLINNTGIKVNALTSNGLTALDILIQSHRDLKDMDISHTLTAAGAFQTATNRKPSPPPPPPPPPPPFSSLHELRITDIFRRVISAIFGNKKESWFLMRQDALLVAASLIATVAFQTGVTPPGGVWQDDNPAMNRTAGTSVMAEKQLATYNKFLAFNTTGFTASLIVILMLVTGLPSRHVVFVRIPVVAMWVAVWYMAFTYFYSIKFLTPKHFDSIIINIVIAVSVVASASFVVFFLVKLFFALSHPDRKLNTLSRKPTTDQDP 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40931755 40934334 - Maker00025417 Lcy13g2203 652508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2203 459 MobiDBLite consensus disorder prediction 244 265 - -
Lcy13g2203 459 ProSiteProfiles Ankyrin repeat region circular profile. 72 99 - -
Lcy13g2203 459 PANTHER HOMEOBOX PROTEIN WARIAI 8 434 - -
Lcy13g2203 459 SMART ANK_2a 4 33 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 SMART ANK_2a 38 67 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 SMART ANK_2a 178 208 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 SMART ANK_2a 106 135 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 SMART ANK_2a 140 169 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 SMART ANK_2a 212 245 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 SMART ANK_2a 72 101 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 SUPERFAMILY Formin homology 2 domain (FH2 domain) 252 262 - -
Lcy13g2203 459 Pfam Ankyrin repeats (3 copies) 141 208 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 Pfam Ankyrin repeats (3 copies) 71 128 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 ProSiteProfiles Ankyrin repeat profile. 106 128 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 Pfam Ankyrin repeats (many copies) 9 55 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 Gene3D - 1 253 IPR036770 -
Lcy13g2203 459 ProSiteProfiles Ankyrin repeat profile. 72 99 IPR002110 GO:0005515(InterPro)
Lcy13g2203 459 Pfam Domain of unknown function 290 400 IPR026961 -
Lcy13g2203 459 SUPERFAMILY Ankyrin repeat 4 223 IPR036770 -
Lcy13g2203 459 ProSiteProfiles Ankyrin repeat region circular profile. 106 128 - -
Lcy13g2203 459 MobiDBLite consensus disorder prediction 248 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2203 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2203 Lcy-Chr13:40931755 Lcy13g2205 Lcy-Chr13:40945407 1.20E-86 dispersed
Lcy13g2202 Lcy-Chr13:40924961 Lcy13g2203 Lcy-Chr13:40931755 8.34E-06 tandem
Lcy13g2203 Lcy-Chr13:40931755 Lcy13g2204 Lcy-Chr13:40937167 3.33E-09 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58