Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2206 ATGCCGAGCAGTGGAAGAAACAAGCTTCATGAAGCCGCCATTGAAGGCAACGTACCAATGTTGTTAGATTTGCTCCAACAAGATCCATTGCTACTGGCCAGAGTGAAGCTCAACGACTTCAACGAGACTCCTCTGCACGTGGCTGCTCTTCTTGGGCACGTGAGATTTGTCGATGAGATTCTGAAGCGAAGGCCTCAGCTGGCCAAAGACTTGGATTCTCGCCGATTTTCGGCTCTCCATTTGGCGGCGGCCGAAGGGTTTGTGGAAATAGTGAAACTTTTGCTGGGAGTTGATGCTGATATGTGCTTCATTTGCAACGAAGATGGCCACAACCCTCTTCATCTCGCCGCCGTGAGAGGTCGGGTGGATGTCTTGGTCGAGCTCGTTAGAGCCAGACCGGAAGCTGCACGAGCTGCCGTGGACGGCGGCGGAACGGTGTTGCATTTATGTGTCAAGTACAACCAGCTTGAGGCTCTTAAGAAGTTAATTGAAACTGTGGATGACAGTGATTTTATTAACGAGCAGGATGATTATGGCTTCACTATCCTCCATTTAGCAGTCTCCAACAAACAGCTTCAGACTGTGAAATATCTTACCAAGCATTCTGGAATCAAAGTAAATGCTTTAACCTCAAATGGGTTAACAGCTATAGACATTCTCACTCAAAGCCACAGAGATGTAAAGGACATGGACATCGCAGAGACTCTCACAGCCGCCAAAGCCGTCCGAACCAAAAAACCAAAGTCGTCGCCGCCGCCGCAGCGGTCTTCATCCAACAACAAAAAGCAAAAGATCCACAGGTGGAGGGGGCTTTTCTCGGCCATTTTCCACAATGGCGATTGGTGGTTTTCCGACCAACGAAGCGAGTGGGCTAGGAAGGAAGAGGCATTAATGATCGTGGCATCACTGATTGCGACGATGGCTTTTCAGGCTGGAGTGAACCCTCCTGGCGGCGTGTGGCAGGAGGATTCCGTCTCCGGGAATTCAACTCGACTGGCCGGGACGTCGATATTCGCTTCGAATCAAAGACAAGACTACAACAAGTATCTTGTGGGTAATACAACAGGATTCATGACTTCGGTGCTTGCGATTTTGATGATCATCACTGGGTTACCTCAGAAACGCATTTTCATGAGGATTTTGATCATTACGATGTGGATTGCAATGTGTTCCATGGCTTACACTTATGGATTCTCCATCAAATTTTTCACTCCAAGACATTTATCAAGCTCTGACTCCAGTTCTTTCGCTCCAGCACCACAACCAGGAGCCTTCGACGCTTCTTCAATTGAAAAATCCAAATCCATCCTCTTTAAGATTTCCCTATATGTCGCTATAGTGGTTACTTCTGCGCTGAGTCTGTTCTTGCTCGGAAAGCTCTTCTACGTTCATTCTCGAGGGAATAAATCGACTAAACGCCAAGACCCTTCCCTCGAATTATAA 1443 47.82 MPSSGRNKLHEAAIEGNVPMLLDLLQQDPLLLARVKLNDFNETPLHVAALLGHVRFVDEILKRRPQLAKDLDSRRFSALHLAAAEGFVEIVKLLLGVDADMCFICNEDGHNPLHLAAVRGRVDVLVELVRARPEAARAAVDGGGTVLHLCVKYNQLEALKKLIETVDDSDFINEQDDYGFTILHLAVSNKQLQTVKYLTKHSGIKVNALTSNGLTAIDILTQSHRDVKDMDIAETLTAAKAVRTKKPKSSPPPQRSSSNNKKQKIHRWRGLFSAIFHNGDWWFSDQRSEWARKEEALMIVASLIATMAFQAGVNPPGGVWQEDSVSGNSTRLAGTSIFASNQRQDYNKYLVGNTTGFMTSVLAILMIITGLPQKRIFMRILIITMWIAMCSMAYTYGFSIKFFTPRHLSSSDSSSFAPAPQPGAFDASSIEKSKSILFKISLYVAIVVTSALSLFLLGKLFYVHSRGNKSTKRQDPSLEL 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40950039 40952489 + Maker00025293 Lcy13g2206 652511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2206 480 SUPERFAMILY Ankyrin repeat 4 223 IPR036770 -
Lcy13g2206 480 ProSiteProfiles Ankyrin repeat region circular profile. 108 130 - -
Lcy13g2206 480 PANTHER HOMEOBOX PROTEIN WARIAI 9 440 - -
Lcy13g2206 480 ProSiteProfiles Ankyrin repeat profile. 74 101 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 MobiDBLite consensus disorder prediction 240 265 - -
Lcy13g2206 480 Pfam Ankyrin repeats (3 copies) 113 208 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 Pfam Ankyrin repeats (3 copies) 9 100 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 Pfam Domain of unknown function 291 399 IPR026961 -
Lcy13g2206 480 Gene3D - 2 262 IPR036770 -
Lcy13g2206 480 ProSiteProfiles Ankyrin repeat region circular profile. 74 101 - -
Lcy13g2206 480 SMART ANK_2a 40 69 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 SMART ANK_2a 178 208 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 SMART ANK_2a 108 137 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 SMART ANK_2a 212 245 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 SMART ANK_2a 74 103 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 SMART ANK_2a 4 33 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 SMART ANK_2a 142 171 IPR002110 GO:0005515(InterPro)
Lcy13g2206 480 ProSiteProfiles Ankyrin repeat profile. 108 130 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2206 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2202 Lcy-Chr13:40924961 Lcy13g2206 Lcy-Chr13:40950039 1.29E-13 dispersed
Lcy13g2206 Lcy-Chr13:40950039 Lcy13g2211 Lcy-Chr13:40986202 4.69E-78 dispersed
Lcy13g2205 Lcy-Chr13:40945407 Lcy13g2206 Lcy-Chr13:40950039 2.62E-80 tandem
Lcy13g2206 Lcy-Chr13:40950039 Lcy13g2207 Lcy-Chr13:40963720 1.49E-14 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g137 . . . . . . . . . . . . . . Sed08g1788 . . Bhi04g01497 Tan02g1599 Cmetu03g0638 . Hepe08g1418 . Lcy13g2206 . . . . . . . . . . . . . . . . Blo18g00266 . . . . . Bma02g00544 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00846 . Chy03g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58