Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2209 ATGGCGACAAAAAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCGGAGCTCCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCGACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGAAGTTCTGAACCTCAAATAAAAAATACGAAGGCAGTTCAATCGAAGGACGAGGATGAGGAAGGTTTGGAAGAGGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGAGCAGAGCATATCAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA 612 42.65 MATKSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40977467 40982352 - Maker00025410 Lcy13g2209 652514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2209 203 MobiDBLite consensus disorder prediction 95 143 - -
Lcy13g2209 203 Pfam Alfin 5 88 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy13g2209 203 PANTHER CPG BINDING PROTEIN 4 202 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy13g2209 203 CDD PHD_AL_plant 149 199 IPR044104 -
Lcy13g2209 203 SMART PHD_3 149 197 IPR001965 -
Lcy13g2209 203 SUPERFAMILY FYVE/PHD zinc finger 139 200 IPR011011 -
Lcy13g2209 203 ProSiteProfiles Zinc finger PHD-type profile. 147 199 IPR019787 -
Lcy13g2209 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 198 IPR013083 -
Lcy13g2209 203 MobiDBLite consensus disorder prediction 95 124 - -
Lcy13g2209 203 ProSitePatterns Zinc finger PHD-type signature. 150 196 IPR019786 -
Lcy13g2209 203 FunFam PHD finger alfin-like protein 142 198 - -
Lcy13g2209 203 Pfam PHD-finger 150 196 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2209 Lcy-Chr13:40977467 Lcy4g2251 Lcy-Chr4:49057523 5.57E-115 dispersed
Lcy13g2209 Lcy-Chr13:40977467 Lcy13g2215 Lcy-Chr13:41017907 3.96E-142 proximal
Lcy13g2209 Lcy-Chr13:40977467 Lcy3g2232 Lcy-Chr3:49163114 3.38E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19461 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2209 K26274 - csv:101208889 350.517