Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2215 ATGGACGGGGGCGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAAGGCCGTAGAGCTGGCCTGATTAAGGCTCTAACTACTGGTGAACTTTTACTTCATTCTCCTCTTGAAATTGTTTCGCGCTTTCGTCCTTTTGATGTTGAAGAGTTCTACCAGCAATGTGACCCTGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCGGAGCTCCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCGACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGAAGTTCTGAACCTCAAATAAAAAATACGAAGGCAGTTCAATCGAAGGACGAGGATGAGGAAGGTTTGGAAGAGGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGAGCAGAGCATATCAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA 816 43.63 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTGELLLHSPLEIVSRFRPFDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41017907 41022781 - Maker00025414 Lcy13g2215 652520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2215 271 ProSitePatterns Zinc finger PHD-type signature. 218 264 IPR019786 -
Lcy13g2215 271 SMART PHD_3 217 265 IPR001965 -
Lcy13g2215 271 MobiDBLite consensus disorder prediction 163 192 - -
Lcy13g2215 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 266 IPR013083 -
Lcy13g2215 271 SUPERFAMILY FYVE/PHD zinc finger 207 268 IPR011011 -
Lcy13g2215 271 CDD PHD_AL_plant 217 267 IPR044104 -
Lcy13g2215 271 ProSiteProfiles Zinc finger PHD-type profile. 215 267 IPR019787 -
Lcy13g2215 271 FunFam PHD finger alfin-like protein 210 266 - -
Lcy13g2215 271 Pfam Alfin 50 156 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy13g2215 271 Pfam PHD-finger 218 264 IPR019787 -
Lcy13g2215 271 PANTHER CPG BINDING PROTEIN 8 270 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy13g2215 271 MobiDBLite consensus disorder prediction 163 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2215 Lcy-Chr13:41017907 Lcy4g2251 Lcy-Chr4:49057523 1.66E-144 dispersed
Lcy13g2209 Lcy-Chr13:40977467 Lcy13g2215 Lcy-Chr13:41017907 3.96E-142 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19462 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2215 K26274 - csv:101208889 453.366