Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2215 ATGGACGGGGGCGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAAGGCCGTAGAGCTGGCCTGATTAAGGCTCTAACTACTGGTGAACTTTTACTTCATTCTCCTCTTGAAATTGTTTCGCGCTTTCGTCCTTTTGATGTTGAAGAGTTCTACCAGCAATGTGACCCTGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCGGAGCTCCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGGATGCAAGAAAAGGACTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCGACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGAAGTTCTGAACCTCAAATAAAAAATACGAAGGCAGTTCAATCGAAGGACGAGGATGAGGAAGGTTTGGAAGAGGAAGACGAGGAAGAACACGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGAGCAGAGCATATCAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGA 816 43.63 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTGELLLHSPLEIVSRFRPFDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41017907 41022781 - Maker00025414 Lcy13g2215 652520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2215 271 ProSitePatterns Zinc finger PHD-type signature. 218 264 IPR019786 -
Lcy13g2215 271 SMART PHD_3 217 265 IPR001965 -
Lcy13g2215 271 MobiDBLite consensus disorder prediction 163 192 - -
Lcy13g2215 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 266 IPR013083 -
Lcy13g2215 271 SUPERFAMILY FYVE/PHD zinc finger 207 268 IPR011011 -
Lcy13g2215 271 CDD PHD_AL_plant 217 267 IPR044104 -
Lcy13g2215 271 ProSiteProfiles Zinc finger PHD-type profile. 215 267 IPR019787 -
Lcy13g2215 271 FunFam PHD finger alfin-like protein 210 266 - -
Lcy13g2215 271 Pfam Alfin 50 156 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy13g2215 271 Pfam PHD-finger 218 264 IPR019787 -
Lcy13g2215 271 PANTHER CPG BINDING PROTEIN 8 270 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy13g2215 271 MobiDBLite consensus disorder prediction 163 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2215 K26274 - - csv:101208889 453.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2215 Lcy-Chr13:41017907 Lcy4g2251 Lcy-Chr4:49057523 1.66E-144 dispersed
Lcy13g2209 Lcy-Chr13:40977467 Lcy13g2215 Lcy-Chr13:41017907 3.96E-142 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1123 . 1 290 Alfin-like Transcription Factor Family AT1G14510 72.8 4.8e-107 384.8
Lcy13g2215 . 9 268 Alfin-like Transcription Factor Family AT1G14510 66.2 8.9e-93 337.4
Lcy3g2232 . 1 248 Alfin-like Transcription Factor Family AT1G14510 65.1 7.5e-92 334.3
Lcy4g2251 . 73 344 Alfin-like Transcription Factor Family AT1G14510 59.4 1.7e-83 306.6
Lcy5g0103 . 8 231 Alfin-like Transcription Factor Family AT1G14510 59.6 2.8e-78 289.3
Lcy13g2209 . 5 200 Alfin-like Transcription Factor Family AT1G14510 67.9 9.6e-71 264.2
Lcy7g0988 . 8 117 Alfin-like Transcription Factor Family AT1G14510 71.4 1.0e-43 174.5
Lcy13g2215 . 1 270 Alfin-like Transcription Factor Family AT5G26210 69.1 7.8e-105 377.5
Lcy4g2251 . 65 346 Alfin-like Transcription Factor Family AT5G26210 65.7 2.6e-100 362.5
Lcy3g2232 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 6.0e-97 351.3
Lcy6g1123 . 9 292 Alfin-like Transcription Factor Family AT5G26210 63.5 2.5e-87 319.3
Lcy13g2209 . 5 202 Alfin-like Transcription Factor Family AT5G26210 72.0 1.5e-79 293.5
Lcy5g0103 . 8 235 Alfin-like Transcription Factor Family AT5G26210 58.9 2.5e-79 292.7
Lcy7g0988 . 7 111 Alfin-like Transcription Factor Family AT5G26210 75.2 5.3e-45 178.7
Lcy13g2215 . 1 270 Alfin-like Transcription Factor Family AT3G42790 65.8 5.9e-97 351.3
Lcy3g2232 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 9.4e-95 344.0
Lcy4g2251 . 65 346 Alfin-like Transcription Factor Family AT3G42790 60.4 1.2e-89 327.0
Lcy6g1123 . 9 294 Alfin-like Transcription Factor Family AT3G42790 60.8 7.5e-84 307.8
Lcy5g0103 . 8 233 Alfin-like Transcription Factor Family AT3G42790 59.2 3.2e-79 292.4
Lcy13g2209 . 5 202 Alfin-like Transcription Factor Family AT3G42790 67.3 1.1e-71 267.3
Lcy7g0988 . 7 111 Alfin-like Transcription Factor Family AT3G42790 74.3 3.8e-43 172.6
Lcy5g0103 . 1 235 Alfin-like Transcription Factor Family AT5G05610 74.0 2.4e-103 372.5
Lcy3g2232 . 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 1.1e-89 327.0
Lcy13g2215 . 8 270 Alfin-like Transcription Factor Family AT5G05610 62.0 5.7e-89 324.7
Lcy4g2251 . 72 346 Alfin-like Transcription Factor Family AT5G05610 55.8 1.7e-80 296.6
Lcy6g1123 . 9 292 Alfin-like Transcription Factor Family AT5G05610 54.4 4.5e-78 288.5
Lcy13g2209 . 8 202 Alfin-like Transcription Factor Family AT5G05610 67.2 4.5e-70 261.9
Lcy7g0988 . 1 117 Alfin-like Transcription Factor Family AT5G05610 80.3 1.1e-52 204.1
Lcy7g0990 . 210 333 Alfin-like Transcription Factor Family AT5G05610 72.0 8.9e-50 194.5
Lcy5g0103 . 43 235 Alfin-like Transcription Factor Family AT3G11200 74.4 1.2e-83 307.0
Lcy13g2215 . 62 270 Alfin-like Transcription Factor Family AT3G11200 65.6 2.7e-75 279.3
Lcy4g2251 . 138 346 Alfin-like Transcription Factor Family AT3G11200 64.1 2.9e-74 275.8
Lcy3g2232 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.5 1.1e-73 273.9
Lcy13g2209 . 5 202 Alfin-like Transcription Factor Family AT3G11200 64.1 2.4e-68 256.1
Lcy6g1123 . 44 292 Alfin-like Transcription Factor Family AT3G11200 54.0 4.0e-63 238.8
Lcy7g0990 . 192 333 Alfin-like Transcription Factor Family AT3G11200 61.0 2.1e-48 189.9
Lcy7g0988 . 43 117 Alfin-like Transcription Factor Family AT3G11200 92.0 1.7e-37 153.7
Lcy6g1123 . 1 198 Alfin-like Transcription Factor Family AT2G02470 69.7 1.5e-71 266.9
Lcy3g2232 . 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 5.7e-63 238.4
Lcy13g2215 . 1 176 Alfin-like Transcription Factor Family AT2G02470 69.9 1.4e-61 233.8
Lcy4g2251 . 65 254 Alfin-like Transcription Factor Family AT2G02470 62.1 3.9e-56 215.7
Lcy5g0103 . 8 135 Alfin-like Transcription Factor Family AT2G02470 74.6 1.4e-53 207.2
Lcy7g0988 . 8 117 Alfin-like Transcription Factor Family AT2G02470 72.3 2.2e-43 173.3
Lcy13g2209 . 5 108 Alfin-like Transcription Factor Family AT2G02470 79.8 1.4e-40 164.1
Lcy13g2215 . 1 185 Alfin-like Transcription Factor Family AT5G20510 69.9 8.0e-70 260.8
Lcy3g2232 . 1 162 Alfin-like Transcription Factor Family AT5G20510 77.1 8.8e-69 257.3
Lcy4g2251 . 65 260 Alfin-like Transcription Factor Family AT5G20510 60.9 1.3e-59 226.9
Lcy6g1123 . 3 205 Alfin-like Transcription Factor Family AT5G20510 57.6 8.3e-59 224.2
Lcy5g0103 . 7 160 Alfin-like Transcription Factor Family AT5G20510 61.9 5.7e-52 201.4
Lcy13g2209 . 5 117 Alfin-like Transcription Factor Family AT5G20510 74.3 4.4e-44 175.3
Lcy7g0988 . 7 111 Alfin-like Transcription Factor Family AT5G20510 73.3 1.7e-43 173.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19462 None None None None Lcy TF