Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g2224 | ATGAGCCTGCGCAAGGGCTCTAAGGTCTGGGTGGAAGACAGAGATTTTGCTTGGGTAGCAGCTGAAGTCCTCGACTTCGTTGGTAAACAAGTTCAAGTTGCAACTGTAAATGGAAAGAAGGTCTTGGCTCTTCCTGAGAAGCTTCTGGCGAGGGACGCGGATGAGGACGACCATGGAGGTGTGGATGACATGACGAAGTTGACCTATTTGAATGAGCCAGGGGTGCTTTATAATCTTCAAAGAAGATATTCTCTCAATGACATATATATGTACAAGGGAGCACCTTTTGGGGAATTGAGCCCTCATGTTTTTGCAGTTGCTGATGCTTCATATAGAGCAATGATTAGTGAAGGTCGAAGCCAGTCTATATTGGTTAGTGGAGAGAGTGGGGCAGGGAAAACCGAGACAACGAAATTGATTATGCAGTACCTTACATTTGTTGGAGGTCGAGCGTTAGGCAATGACAGAACTGTTGAGCAACAAGTTCTTGAAGTAAGGGTCACTGTCTTCAAATCCTTTACTGGAAGCATTTGTCGTTTTGGGAAGTTTGTCGAGATCCAGTTTGATGCAAATGGTAGAATATCAGGTGCTGCAATTAGAACTTATCTTCTAGAACGTTCTCGTGTTGATGCAGAGAAGTACAAGTTAGATCACCCAAGTCATTTTCGATATTTAAATCAAAGCCAGACCTATGATTTAGATGGAGTGAGCAATGCTGAGGAGTATATTAGGACAAGGAGGGCAATGGATATTGTTGGTATCAATCATGAGGATCAGGAAGCTATCTTTCGTACCTTGGCTGCAATTTTGCATCTAGGGAACGTTGAGTTTTCTCCTGGAAAAGAACACGACTCTTCAGTCTTGAAGGATGAAAAGTCTACCTTTCATTTAGGAGTGGCTTCTAATCTTCTGATGTGTGATTCCAACCTCTTGGTCTCAGCCCTTTGTACTCGTTCAATTCAAACTCGTGAAGGAATTATCGTTAAAGCACTAGACTGTGAAGGTGCTGTTACTAGTCGGGATGCATTGGCAAAGACTGTTTATGCTCGTCTTTTTGATTGGCTTGTCGATAAGATTAACCGGTCTGTCGGGCAAGATTTGAATTCTCAATCTCAAATTGGGTTATTGGACATTTATGGTTTCGAATGCTTTAAGGACAATAGTTTTGAGCAGTTTTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTGTTTAAGATGGAGCAAGAGGAGTATAGCAAAGAGGAAATAAATTGGAGCTACATTGAATTTATTGACAATCAGGATGTGTTGGATTTGATCGAGAAGATTGTGTGCATAATTAGGGTTATGAGGAGTGACATTAAGAATGATAGTATGTTCCCAAGATCAACTCATGAAACATTCTCAACCAAATTATTTCAGAATTTTCGTACTCATCCAAGGTTGGAAAGAACAAAATTTTCAGAAACAGATTTCACTCTGTCCCATTATGCTGGAAAGGTCACTTATCATACAGATACTTTTTTAGATAAAAATCGTGATTATGTTGTGGTCGAGCATTGCAATCTATTGGCTTCTTCTAGATGCACTTTTGTTGCTGGCCTTTTCTCTTCCTTACCGGAGGAATCTTCAAGATCATCGTATAAATTTTCTTCTGTAGCTTCAAGATTTAAGCAACAACTTCAAGCACTCATGGAGACACTGAATTCAACTGAGCCCCATTATGTACGCTGTGTGAAGCCAAACTCTCTTAATAGGCCCCAGAAGTTTGAGAATCTAAGCATTCTGCATCAATTACGTTGTGGGGGTGTTTTGGAGGCTGTTCGAATAAGTCTTGCAGGTTATCCCACCAGAAGAACTTACACAGAATTTATTGATCGTTTTGGTTTGTTGGCTCCTGATTTATTGGATGGAAGCTATGATGAACGATTGATTACTGAAAAGATTCTACAAAAGTTGAAGCTCAAAAATTTTCAGTTGGGTAGGACCAAAGTATTTCTTAGGGCTGGTCAAATTGGCATTCTGGATGCTCGAAGAGCTGAAGTATTAGATAATGCTGCGAAGTGTATACAACGTCGATTCCGAACATATCATGCGCGCAAGGATTTTCTATTGATGCGTTCTACTGCAATTGCACTCCAAGCATATTGCAGAGGATGCCTTGCCCGAAAGTTTTATGTAGCAAAACGGGAAAGTACTGCTGCCACTACAATACAAAAATATATTCGCAGGTGGTTCTTCAGGAATACTTATTTGGTGCTCAGTTCAGCTACTTTAACCATACAGTCCAGTATTCGTGGTTTTGCAACTCGCAATAGGTTTTTGCATGATAGAAGAAATAAAGCTGCGGTATTAATTCAGGCTCGATGGAGGACATTCAAGGTTCGTGCTATTTTCCATCGCCACCAAGCTTCTATTATTGCAATACAATGTCGATGGAGGCAAAAGCTTGCAAAAAGGGAACTTCGAAGACTTAAACAAGAGGCTAATGAAGCTGGAGCATTGCGTTTGGCTAAGAACAAACTCGAGAAGCAGTTGGAGGATCTTACGTGGCGCTTGCATTTGGAGAAAAGATTGCGGTGCTTGGACTGCCAAATTATGTCCGTTATATATCTGAAGTGA | 2619 | 40.7 | MSLRKGSKVWVEDRDFAWVAAEVLDFVGKQVQVATVNGKKVLALPEKLLARDADEDDHGGVDDMTKLTYLNEPGVLYNLQRRYSLNDIYMYKGAPFGELSPHVFAVADASYRAMISEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRALGNDRTVEQQVLEVRVTVFKSFTGSICRFGKFVEIQFDANGRISGAAIRTYLLERSRVDAEKYKLDHPSHFRYLNQSQTYDLDGVSNAEEYIRTRRAMDIVGINHEDQEAIFRTLAAILHLGNVEFSPGKEHDSSVLKDEKSTFHLGVASNLLMCDSNLLVSALCTRSIQTREGIIVKALDCEGAVTSRDALAKTVYARLFDWLVDKINRSVGQDLNSQSQIGLLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKIVCIIRVMRSDIKNDSMFPRSTHETFSTKLFQNFRTHPRLERTKFSETDFTLSHYAGKVTYHTDTFLDKNRDYVVVEHCNLLASSRCTFVAGLFSSLPEESSRSSYKFSSVASRFKQQLQALMETLNSTEPHYVRCVKPNSLNRPQKFENLSILHQLRCGGVLEAVRISLAGYPTRRTYTEFIDRFGLLAPDLLDGSYDERLITEKILQKLKLKNFQLGRTKVFLRAGQIGILDARRAEVLDNAAKCIQRRFRTYHARKDFLLMRSTAIALQAYCRGCLARKFYVAKRESTAATTIQKYIRRWFFRNTYLVLSSATLTIQSSIRGFATRNRFLHDRRNKAAVLIQARWRTFKVRAIFHRHQASIIAIQCRWRQKLAKRELRRLKQEANEAGALRLAKNKLEKQLEDLTWRLHLEKRLRCLDCQIMSVIYLK | 872 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 41111268 | 41130435 | + | Maker00025278 | Lcy13g2224 | 652529 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g2224 | 872 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 4 | 53 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy13g2224 | 872 | Pfam | IQ calmodulin-binding motif | 755 | 773 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | Pfam | IQ calmodulin-binding motif | 709 | 723 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | Pfam | IQ calmodulin-binding motif | 684 | 702 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | Pfam | IQ calmodulin-binding motif | 780 | 798 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | Pfam | IQ calmodulin-binding motif | 733 | 750 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | Pfam | Myosin head (motor domain) | 88 | 209 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy13g2224 | 872 | Pfam | Myosin head (motor domain) | 212 | 667 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy13g2224 | 872 | ProSiteProfiles | IQ motif profile. | 705 | 734 | - | - | |
| Lcy13g2224 | 872 | PANTHER | MYOSIN | 9 | 778 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lcy13g2224 | 872 | Gene3D | - | 382 | 570 | - | - | |
| Lcy13g2224 | 872 | ProSiteProfiles | IQ motif profile. | 801 | 830 | - | - | |
| Lcy13g2224 | 872 | Coils | Coil | 814 | 858 | - | - | |
| Lcy13g2224 | 872 | PRINTS | Myosin heavy chain signature | 372 | 400 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy13g2224 | 872 | PRINTS | Myosin heavy chain signature | 120 | 145 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy13g2224 | 872 | PRINTS | Myosin heavy chain signature | 161 | 188 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy13g2224 | 872 | PRINTS | Myosin heavy chain signature | 425 | 453 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy13g2224 | 872 | Gene3D | Kinesin motor domain | 366 | 609 | IPR036961 | - | |
| Lcy13g2224 | 872 | SMART | MYSc_2a | 53 | 680 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy13g2224 | 872 | Gene3D | - | 681 | 730 | - | - | |
| Lcy13g2224 | 872 | Gene3D | - | 779 | 829 | - | - | |
| Lcy13g2224 | 872 | Gene3D | - | 731 | 778 | - | - | |
| Lcy13g2224 | 872 | Gene3D | - | 613 | 680 | - | - | |
| Lcy13g2224 | 872 | Gene3D | Kinesin motor domain | 8 | 91 | IPR036961 | - | |
| Lcy13g2224 | 872 | Gene3D | Kinesin motor domain | 92 | 209 | IPR036961 | - | |
| Lcy13g2224 | 872 | ProSiteProfiles | IQ motif profile. | 682 | 711 | - | - | |
| Lcy13g2224 | 872 | ProSiteProfiles | Myosin motor domain profile. | 90 | 679 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy13g2224 | 872 | SMART | iq_5 | 800 | 822 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | SMART | iq_5 | 704 | 726 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | SMART | iq_5 | 681 | 703 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | SMART | iq_5 | 752 | 774 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | SMART | iq_5 | 729 | 751 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | SMART | iq_5 | 777 | 799 | IPR000048 | GO:0005515(InterPro) | |
| Lcy13g2224 | 872 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 728 | 828 | IPR027417 | - | |
| Lcy13g2224 | 872 | Gene3D | - | 212 | 253 | - | - | |
| Lcy13g2224 | 872 | ProSiteProfiles | IQ motif profile. | 778 | 807 | - | - | |
| Lcy13g2224 | 872 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 255 | 548 | - | - | |
| Lcy13g2224 | 872 | ProSiteProfiles | IQ motif profile. | 753 | 782 | - | - | |
| Lcy13g2224 | 872 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 50 | 727 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g2224 | Lcy-Chr13:41111268 | Lcy2g0944 | Lcy-Chr2:8748138 | 1.03E-292 | dispersed | |
| Lcy13g2224 | Lcy-Chr13:41111268 | Lcy3g1285 | Lcy-Chr3:38810644 | 1.17E-75 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g2224 | K10357 | - | csv:101210527 | 1517.29 |