Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2225 ATGCTGAATTTGGTCTACAATAACATAGAATCTAAACCTAGGAAGGGGGATAAGACTATGTTCTGGGAAGATGTTTGGCTTGGAACAACAAAACTCCAGTCTAAATACCCTTCCCTCTATCATCTATCGATCAAAAAGGAAGCCCCCATTGTTGATATGTGGAATTCATCATCTGAGGCATCGAATCTTCATTTGAGAATAAACTTAAATGCAGTGGAAATAGAGGAATCGGCTTCATTATCACATATCCTCTCAACATTTTCATTCAAAGAAGAGGAAGACATTTGGTTTTGGAAAGGAGTTTTTACCACAAAATCACTAACTAAAATGTTGGCTTCCTGTGGAAACTCCACAAATTCTGCCTTTTATAATCTGATATGGAGAGGTCCAATGCCAAAAAAGGGTTCCAATGAAGAGGCTAAGTCAAACGAAATATTAAAATTGCAAAAGATGCTGGAATCTTTGAGTCTGGAGTTAGATGCAGCTAAATTGGCTGCAATCAATGAATGCAACAAAAATGCTGTGCTGCAAAACCAAATGGAATTGTTGGCGAAAGAGAAGTATGCTTTTGAAAGAGAAACTGTAGCAACAGTTGAATTAAAAAAAGAAAATGCTTTCCTCAAGGTGAGTTGTGCAATTGACCTTTCTGGTAATATGATTTCGCTTGTGTTTCGTTATGTTTTGTCTTCTGTCATGATTCTTGGCAATACTATCTTTTGGATGGTATATTCCTATAGCGGCCGTCATGAGAAATATTTAGAATCCCATAGGTTGGAACTCTTTGGCCTTCAAATATCCACTTTGGGAAGCATTAAGAGTTTTATCTATCTAATTAATGCTGTCGAGGTGGTTAGGGATATTATTAGGGCATTGAAGAGTGCTTTGGATGCCCTGGAGAAAAAGAACTCAGCTCTAGAGGTCAAGCTTGTTGAAGCACAAAAGAGTAGTAGCCACACTGTTGAAAAGTTGCAGGAGGTTGAACAGAAATGCACTAAGCTTCAACAGAATGTGAAAAGTCTGGAAGAGAAACTCTCAGTTTTAGAGGACGAGAATCATGTACTGCGACAGAGAGCCTTAAATGCAACTCCGAGGAGCAACCGACCCAATTTTGTAAGGGCATTATCGGAGAAATCCTCTGGTGCGCTTGTCCCTAATGCTGATCGGAAAACTCTATTTGAGTCACCAACACCTACAAAACTGGTTGCACCTTTTTCACAAGGCCTTTCTGAATCACGACGAACAAAATTAACCATAGAGAGACACCAGGAAAACTATGAAGTCCTTTCTAGGTGTATTAAAGAAAATTTGGGGTTTAAAGGTGGTAAGCCACTGGCCGCTTGCATCATCTACAAATGCCTTCTTAACTGGCATGCCTTTGAATCAGAACGAACAGTTATTTTTGACTACATAATTGAAGGAATCAATGATGCCCTCAAGGCTGGGGACGAGAACATTACCTTGCCATATTGGTTATCAAACGCTTCTGCATTACTATGCCTCCTGCAAAGAAATTTAAAGTCAAATGGTTTTTTGAGTGCAGCTAGTCAGCGTTCCACAGGTTCTACTGGCTTAGCTAGCAGGATTTCTCAGGGACTCAAATCTCCCTTCAAATATATTGGGTTTGAAGATGGGATTTCTCATCTTGAAGCAAGATATCCGGCAATATTGTTTAAACAGCAATTAACTGCTTGCGTGGAGAAGATTTTTGGCTTGATCCGTGATAATTTGAAGAAAGAATTATCTCCATTGTTGGGCTCATGTATTCAGGCACCTAAAGCTGCACGAGTACATGCTGGGAAGTCCTCTAGATCGCCTGGTGTTCCTCAGCCATCTACAAGCAGTCCATGGGATAACATAATAAAGTTTTTGGATTCTTTGATGAGTCGATTACGCGATAATCATGTACCATCTTTCTTCATTCGTAAATTGGTTACTCAGGTGTTCTCGTTCATCAATATTTCACTTTTTAATAGCCTTCTTCTGCGACGTGAATGTTGTACATTTTCAAATGGGGAGTATGTGAAATCTGGTCTTGCAGAACTAGAGAAATGGATTGGCAATGCCACAGATGAGTATTCAGGGACCTCTTGGCATGAGCTAAACTATATAAGGCAAGCTGTCGGGTTTCTGGTGGTTGCTCAAATGAGGGAAATTCTGAACAAGGATAATCAGAATTTAACCTCAAACTCATTTTTGTTGGATGATGATCTAAGCATCCCATTCTCTACTGAAGACGTCGATATGGCTCTTCCTGCTATTGAACCTTCAGACATTGAACTTCCCACTTTCCTGTCGGAATACCCCTGTGCGCAATTTCTGGTCGAGCATCAAAAGTAG 2337 39.97 MLNLVYNNIESKPRKGDKTMFWEDVWLGTTKLQSKYPSLYHLSIKKEAPIVDMWNSSSEASNLHLRINLNAVEIEESASLSHILSTFSFKEEEDIWFWKGVFTTKSLTKMLASCGNSTNSAFYNLIWRGPMPKKGSNEEAKSNEILKLQKMLESLSLELDAAKLAAINECNKNAVLQNQMELLAKEKYAFERETVATVELKKENAFLKVSCAIDLSGNMISLVFRYVLSSVMILGNTIFWMVYSYSGRHEKYLESHRLELFGLQISTLGSIKSFIYLINAVEVVRDIIRALKSALDALEKKNSALEVKLVEAQKSSSHTVEKLQEVEQKCTKLQQNVKSLEEKLSVLEDENHVLRQRALNATPRSNRPNFVRALSEKSSGALVPNADRKTLFESPTPTKLVAPFSQGLSESRRTKLTIERHQENYEVLSRCIKENLGFKGGKPLAACIIYKCLLNWHAFESERTVIFDYIIEGINDALKAGDENITLPYWLSNASALLCLLQRNLKSNGFLSAASQRSTGSTGLASRISQGLKSPFKYIGFEDGISHLEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLGSCIQAPKAARVHAGKSSRSPGVPQPSTSSPWDNIIKFLDSLMSRLRDNHVPSFFIRKLVTQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATDEYSGTSWHELNYIRQAVGFLVVAQMREILNKDNQNLTSNSFLLDDDLSIPFSTEDVDMALPAIEPSDIELPTFLSEYPCAQFLVEHQK 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41134946 41144254 + Maker00025152 Lcy13g2225 652530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2225 778 Pfam DIL domain 643 715 IPR002710 -
Lcy13g2225 778 SUPERFAMILY Tropomyosin 289 362 - -
Lcy13g2225 778 Coils Coil 145 165 - -
Lcy13g2225 778 Coils Coil 281 315 - -
Lcy13g2225 778 ProSiteProfiles Dilute domain profile. 468 778 IPR002710 -
Lcy13g2225 778 Coils Coil 323 357 - -
Lcy13g2225 778 SMART DIL_2 642 737 IPR002710 -
Lcy13g2225 778 PANTHER DILUTE DOMAIN-CONTAINING PROTEIN YPR089W 443 713 IPR052072 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2225 Lcy-Chr13:41134946 Lcy2g0944 Lcy-Chr2:8748138 1.93E-104 dispersed
Lcy13g2225 Lcy-Chr13:41134946 Lcy13g1400 Lcy-Chr13:32295008 1.84E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2225 K10357 - csv:101210527 912.909