Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2230 ATGATGCACATGACCTTCTACTGGAGCAAGGAGGTGACTCTTCTGATCAATTCATGGCGCACGAATTCATGGCTGAGTTATTCCCTCTCTTTGCTCGCTTGCCTCATCGTCTCCGTTTTCTATCAGTACTTGGAGAATTATCGCATCCGTTTGAAGCTTCTTTCGTGTCGGACGCCGTCGCCGTCGGAGATCGAGGTCCCTCTCCTTCGATCCAAAGTGGACGGAAAGTGGTCGGCTGTGAGATTTGCCGGAGCACTGTTTTTTGGAGTCAACTCGGCGATCGGTTACCTTCTGATGCTCGCGATCATGTCCTTCAATGGCGGAGTTTTCGTTGCGATTGTCTTAGGGCTCGCGATTGGTTATATGGCGTTTAGGAGTGACGATGAGGATGTTAGTATTAGCGTTGAAAATCCATGTGCCTGTGCTTAA 429 49.42 MMHMTFYWSKEVTLLINSWRTNSWLSYSLSLLACLIVSVFYQYLENYRIRLKLLSCRTPSPSEIEVPLLRSKVDGKWSAVRFAGALFFGVNSAIGYLLMLAIMSFNGGVFVAIVLGLAIGYMAFRSDDEDVSISVENPCACA 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41176058 41177037 - Maker00025394 Lcy13g2230 652535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2230 142 Pfam Ctr copper transporter family 74 124 IPR007274 GO:0005375(InterPro)|GO:0016020(InterPro)|GO:0035434(InterPro)
Lcy13g2230 142 Pfam Ctr copper transporter family 4 52 IPR007274 GO:0005375(InterPro)|GO:0016020(InterPro)|GO:0035434(InterPro)
Lcy13g2230 142 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 132 IPR007274 GO:0005375(InterPro)|GO:0005375(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0035434(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2230 K14686 - - csv:101211515 254.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0145 Lcy-Chr11:1553719 Lcy13g2230 Lcy-Chr13:41176058 2.48E-08 dispersed
Lcy13g2230 Lcy-Chr13:41176058 Lcy5g0156 Lcy-Chr5:1588099 6.99E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g175 . . Bda01g00645 . Bpe02g01565 Bpe02g00516 . Bma01g02188 . . Cma01g01695 . Car09g00323 . Sed08g1808 . Cpe06g00266 Bhi04g01527 Tan02g1574 Cmetu03g1182 . Hepe08g1443 . Lcy13g2230 Cla05g01638 Cam05g1748 Cec05g1757 Cco05g1813 Clacu05g1739 Cmu05g1624 Cre05g1751 . . Cone17ag0952 Cone20ag0296 Lsi04g01376 . . . Blo17g00270 Blo18g00256 Bda01g01352 Bda13g01584 Bpe14g00284 . Bma01g00906 . Sed13g1923 . Cmo09g00376 Cma09g00374 . Car01g01309 . . Cpe02g00298 Bhi09g03066 Tan01g3497 Cmetu07g1235 . Hepe01g1925 Mch11g0463 . Cla08g00980 Cam08g1429 Cec08g1007 Cco08g1130 Clacu08g1134 . Cre08g0918 Lsi08g00827 . Chy03g00650 Cme07g00166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006594 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 3 1 1 1 1 1 1 2 38