Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2233 ATGTCAATTGCGACTCGTGGTTGCAGATTACGCTTTGTTATGTTTCAAAAGTTTTTCCCGCCTTTGAACAAATTTCACTTTTCCGATTTCTTTTGCCTGTTCTTCGATCTTCTTTCTCGGAATGGGCACGGTGTTCAGTTCCATGTAATGGTGGTGGTGGTTGTTATGGGAGGTGGTACGGTCGAAGTGGTTAGCAGTAAAGGTTGTTCTAGGCTGCTTTTTGGGTTCTCATCGCCGTTATCGTCATTGGGAGGCCTGCAACAGCTTGAGTCGATGTCTCTCGCTTCATCGTCTTCAAGGTCTGAATCGGTGAAAGCTCGGTTAACCGGCCCCTTTACTGGACTCGTAATTTGTGTTACTGGTTTATCCAAAGAAGCAAGGAAACAAGTTAAGGAAGCTTCGGAGAGATTAGGTGGACATTACAGCCCCAATTTGCATCCACAATGTACCCATTTGGTGGTTCAAATATCCTTTAGCTTGTCTTGGATTAACTACAGCTTAGGTGGACGCAAATTTGAGCATGCCTTTAAGCATGGATCAAGAAACGGGCTCTTTGTTGTCACTCTTGGCTGGTTTGTGGATAGTGTACGGAGAAATGTAAGACTGAGCGAATCTCTTTATAACATCAAGAGTCTTGGAGAAAATAGTGGACGCCTGGATGAATTGAACCAACTAGTAGGGTCCAGTGGTGATGAAAACTCCTGCCTTCCAGTGGGCATTCATGGAGTTGAGAAAAATAGTATGATAGGAGAATCAAATTTACTGTTCTCTAAAGGAGATTATGAGAAAAGAATGGACTCTATTCTCTCTGGTCAATCCATGTATATTGATACATACATTTCATCGGAGCTGCGACATAAGGTTATTGAGGCTTCTAAGGGAGTCGGTGCATCACTTGTGGATCAATGGTTTGCTGGTTGCAGCGCAAGTCACGTGGTTTGCGAAAGCAGTTCCATCCATCGATATCTTGGCCACTCCAGCAACTTAGTTACACCACTCTGGGTTCTGAAAACGCTGAAGGAAAAACGTGCACAAAGACTTATTCACATGTCTGCCGACTTGGCTCGACAGATTAGTTCAACACTTGAAGATTTTTGTACAGAAAATTCAACGGAGGCAATAAATAGGCAATCAAAAGATGCTAGAAATTTTAGAAGCAAGGCCACACAGGCAGAACGTGAACAGATTATTTCAAATGCTAAACTCGGGGTGAGGAAACGTCGTGGTTGTCGAATGCAGACGTGTCAAAACCCAATACGTCCATTAACCCCAAGTAGCCTTTTGGATTCAATCTGCTGGTCAATATCTGAGCCAAGTTCATCTGCTTCTATTTACACAGACTCTTTCAGTAGTGAAGGTGTTAGTGAGCATCATGCTCCAGAGTTCTTTGATGCAACAGGAGATGGCAAGGAATCAGAAGCTTCATTTGCAAACTTAACTCGTCCACTCAGTGAAAGTGAAAAATCTGAAGTCGTATTCAAAAACCATTACTTGACGATACTATTTCCAGTGGATCGTTTCTTCGAGATGGGACCATCTTCGAGGACGTTTTTTAGTGACAATGGGTTCACATGTTTGCAGATTCTGGATCATATTTATGCATTTTATCAGGAGAACATGTCAGATCATGAAATAGAGATGGCAATTCACACTGACTCGAGGCACGCTGACCGATTTCGATCTGTTTACTGCAGTAGAGAAACAACAGAATCTGGTTATACAGCTTTCAAAAGGATAGAATTCTTGGGGAGCCGCAGAAGTTTTGAAATGTTGAAGCGTGTTAATGTTGATAACAATAGTAACGTCTACGAGTTATTGATCAGAGCATGA 1830 42.46 MSIATRGCRLRFVMFQKFFPPLNKFHFSDFFCLFFDLLSRNGHGVQFHVMVVVVVMGGGTVEVVSSKGCSRLLFGFSSPLSSLGGLQQLESMSLASSSSRSESVKARLTGPFTGLVICVTGLSKEARKQVKEASERLGGHYSPNLHPQCTHLVVQISFSLSWINYSLGGRKFEHAFKHGSRNGLFVVTLGWFVDSVRRNVRLSESLYNIKSLGENSGRLDELNQLVGSSGDENSCLPVGIHGVEKNSMIGESNLLFSKGDYEKRMDSILSGQSMYIDTYISSELRHKVIEASKGVGASLVDQWFAGCSASHVVCESSSIHRYLGHSSNLVTPLWVLKTLKEKRAQRLIHMSADLARQISSTLEDFCTENSTEAINRQSKDARNFRSKATQAEREQIISNAKLGVRKRRGCRMQTCQNPIRPLTPSSLLDSICWSISEPSSSASIYTDSFSSEGVSEHHAPEFFDATGDGKESEASFANLTRPLSESEKSEVVFKNHYLTILFPVDRFFEMGPSSRTFFSDNGFTCLQILDHIYAFYQENMSDHEIEMAIHTDSRHADRFRSVYCSRETTESGYTAFKRIEFLGSRRSFEMLKRVNVDNNSNVYELLIRA 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41203827 41209426 - Maker00025229 Lcy13g2233 652538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2233 609 Pfam Family of unknown function (DUF6699) 519 593 IPR046522 -
Lcy13g2233 609 Coils Coil 374 394 - -
Lcy13g2233 609 SUPERFAMILY BRCT domain 109 209 IPR036420 -
Lcy13g2233 609 Pfam BRCA1 C Terminus (BRCT) domain 110 195 IPR001357 -
Lcy13g2233 609 Gene3D BRCT domain 110 211 IPR036420 -
Lcy13g2233 609 CDD BRCT_TopBP1_rpt2_like 110 199 - -
Lcy13g2233 609 ProSiteProfiles BRCT domain profile. 264 343 IPR001357 -
Lcy13g2233 609 ProSiteProfiles BRCT domain profile. 107 209 IPR001357 -
Lcy13g2233 609 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 57 609 - -
Lcy13g2233 609 SMART BRCT_7 109 199 IPR001357 -
Lcy13g2233 609 SMART BRCT_7 266 342 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2233 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g180 . . . . Bpe02g01568 . . . . . . . . . Sed08g1811 . . Bhi04g01532 Tan02g1572 Cmetu03g1762 . Hepe08g1448 . Lcy13g2233 . . . . . . . . . Cone17ag0955 Cone20ag0299 . . . . . Blo18g00254 . Bda13g01582 Bpe14g00286 . . Bma02g00333 . . . . . . Car05g00889 . . . . . . . . . Cla08g00978 Cam08g1427 Cec08g1005 Cco08g1128 Clacu08g1132 . Cre08g0915 Lsi08g00825 . Chy03g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007854 1 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36