Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2234 ATGAATCCAACGGCGGATCCTCCGGTGAAGATTGATCTGCACGTCGACGCCGGCGGCATCATCAGCCAGCAGAATTCTTTAATCCAAAACTTGATTACCTTCCCTTTCAGCTCTACTCCGAGTATGGGGAGTGAGGAGAAATGGTGCGTGGTGACCGGAGGGAGAGGCTTCGCTGCTCGACATCTCGTTGAGATGTTGATTACATACAACATGTTTTCCGTTCGAATCGTTGATTTGGGCCCCTCCATTGAATTGGAAGCAAGAGAGGAGCAAGGGATTCTCGGAGAGGCATTGCGTTCCGGTCGTGCTCAGTACGTTCCGGCCGATCTTCGTGACAAAGCTCAAGTGCTTAAAGCGTTTGAAGGAGCTGAGGTTGTTTTCCACATGGCTGCTCCGAATTCATCCATTAACAATTACAAACTTCATTATTCGGTCAACGTTGAAGGAGCCAAAAATGTAGTTGACGCTTGTGTCGAGCAAAATGTAAAGCGACTAATATATACTAGTTCGGCCAGTGTAGTATTTGATGGAATAAATGGACTTATTAACGCAAATGAGTCACTGCCCTACGCAGCGAAGCATAATGATTTCTACTCTGCGACTAAAGCTGAGGGTGAAGCTTTGATCCTCAAGGCAAACGGCTCAAATGGACTTCTAACTTGTAGCCTAAGGCCCAGTGGCATCTTTGGCCCTGGTGATAGGTTATTGGTTCCCTCCCTAGTCGCTAATGCAAGGGCAGGAAAATCCAAGTTCATTATTGGTGATGGCAATAACACCTATGACTTTACGTATGTTGAAAACGTTGGATATGCCCATGTATGTGCTGAACGAGTTCTAGCCTCAGGAGGAATAAATGCAGAAAAAGCTTCTGGGCAGGCTTATTTCATAACCAACATGGAACCGATCAAGTTTTGGGAGTTTGTCTCACTTATTCTGGCTGGTCTTGGCTACGAAAGACCAAGAATAAAGATCCCTGCCTTCGTAGTGATGCCAATTGCACATATGGTGGACTGGACTTATAAGCTTTTAGGTCCTTATGGAATGCCTCTCCCACAGTTTACACCTTCCCGAATAAGGCTCCTCTCTTGTTGTAGAACTTTTAATTCCTCAAAGGCAAAGGATCTACTTGGCTATATGCCCATTGTTTCACTTCAGGAGGGTATACAAAGGACAATAGAAGCCTACTCTCATTTAAAGGCTGAGCATCAACATAAAAGGGAAGGGCCATCCAAAGCCTCATTATACCTCAGGGGAGGAACATCTGCTGACATTTTACTCTGGAAGGATAAAAGGAAAACATTGATAGCATTGCTTGTTTTGTTGGCTATTTATTATAACTTCATCGCTCCTGAGTGTACCATGATCACTGCACTGTCAAAGCTTCTTTTGATGGGATTGATATTTTTATTTATTCACGGGAGTTTACCAGAGAAAATATTGGGATATCGAGTTGAAAAAGTTTCCTCGTCATGTTTTTCCTTGTCAGAAGAGAGGTCTCGAGGCATTGCCATCTCTATAGCATCATTTTGGAATTCTTCCGTTAGAAATTTTAAATCTCTTTCCAAAGGGAATGATTGGGTGCTCTTGCTTAAGGTTACTGTATCACTGTTAGCTCTTAGCTTTATTGGAGTGGTTTCTCTTCAAACTATATACAAGACAGTGGTTCTATTTGCCTTCACAGTTTTCTTCATATACGAGAAAAAGGAGCAAGAGATTGATTCTTTGTGTCAAAGATTTCAAGTTTGGATGCGAGGCAAACGCAATGTGGTCGGAAAAGTTTCAATGTCAAAAGGATAA 1797 42.96 MNPTADPPVKIDLHVDAGGIISQQNSLIQNLITFPFSSTPSMGSEEKWCVVTGGRGFAARHLVEMLITYNMFSVRIVDLGPSIELEAREEQGILGEALRSGRAQYVPADLRDKAQVLKAFEGAEVVFHMAAPNSSINNYKLHYSVNVEGAKNVVDACVEQNVKRLIYTSSASVVFDGINGLINANESLPYAAKHNDFYSATKAEGEALILKANGSNGLLTCSLRPSGIFGPGDRLLVPSLVANARAGKSKFIIGDGNNTYDFTYVENVGYAHVCAERVLASGGINAEKASGQAYFITNMEPIKFWEFVSLILAGLGYERPRIKIPAFVVMPIAHMVDWTYKLLGPYGMPLPQFTPSRIRLLSCCRTFNSSKAKDLLGYMPIVSLQEGIQRTIEAYSHLKAEHQHKREGPSKASLYLRGGTSADILLWKDKRKTLIALLVLLAIYYNFIAPECTMITALSKLLLMGLIFLFIHGSLPEKILGYRVEKVSSSCFSLSEERSRGIAISIASFWNSSVRNFKSLSKGNDWVLLLKVTVSLLALSFIGVVSLQTIYKTVVLFAFTVFFIYEKKEQEIDSLCQRFQVWMRGKRNVVGKVSMSKG 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41213266 41224784 - Maker00025260 Lcy13g2234 652539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2234 598 ProSiteProfiles Reticulon domain profile. 421 573 IPR003388 -
Lcy13g2234 598 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 396 IPR036291 -
Lcy13g2234 598 FunFam Reticulon-like protein 40 400 - -
Lcy13g2234 598 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 50 399 IPR050177 -
Lcy13g2234 598 Gene3D - 38 400 - -
Lcy13g2234 598 Pfam Reticulon 422 577 IPR003388 -
Lcy13g2234 598 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 50 324 IPR002225 GO:0006694(InterPro)|GO:0016616(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2234 K23558 - - csv:101205275 978.393
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1256 Lcy-Chr11:35749180 Lcy13g2234 Lcy-Chr13:41213266 5.77E-112 dispersed
Lcy13g2234 Lcy-Chr13:41213266 Lcy9g2353 Lcy-Chr9:47823152 1.62E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g182 . . . . . . Bma04g00296 . . . . . . . . . . Bhi04g01534 Tan02g1571 . . Hepe08g1449 . Lcy13g2234 . . . . . . . . . Cone17ag0956 Cone20ag0300 . . . . Blo17g00268 . . Bda13g01581 Bpe14g00288 . . Bma02g00332 . . . . . . Car05g00887 . . . . . . . . . Cla08g00977 Cam08g1426 Cec08g1004 Cco08g1126 Clacu08g1131 . Cre08g0914 Lsi08g00824 . Chy03g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008574 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35