Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy13g2238 | ATGAAACAAAATCGGGCCAACGTTCGGGCTCTGTGTTTTATTGCAGGTTGCGTTTTGTTGTTGGGTGCGGCGGCGGCTCAGAATACGAGCGCCGTGCCGGTGAGCGTCGGGGTGGTGCTGGATATGGAGAGTTGGGTTGGGAAGATGGGGTTGAGTTGTATCGACATGTCGCTGTCGGAATTCTATGAAGCCAATCCTCACTACGACACCAGAATTGTTCTTCATCCCAAAGATTCCGCCGGCGATGTCGTCGGAGCGGCGGCTGCAGCTCTTGACCTGATAAAGAACAACAAAGTTCAAGCAATTCTGGGACCAACGACTTCGATGCAAGCCAATTTCGTGATCGAGCTCGGCCGGAAAGCTCATGTCCCCATTCTCACCTTCACTGCTTCCAGCCCCGCTCTCACCTCCCTCCGCAGCCCTTACTTCTTCCGCCTCACTCAAAACGACTCCGCTCAGGTCGCCGCGATTAGCGCCCTTGTCAAATTCCACAACTGGAATCAGATTGTTCCTATTTACGAGGACGACGAATTCGGGGACGGGATGTTACCGTACTTGATCGACGCGCTGCAGGGTGTGAATGCGCGCGTGCCGTACCGGAGTGTCATCAGTCCGGCGGCCACCGGCGATCAGATAGGAGAAGAGCTTTACAAATTGATGACGATGCAGACGAGAGTGTTCGTGGTGCACATGCTGCCCTCTCTCGCAGCTCGGCTATTCGCCAAGGCGAAGGAAATCGGAATGATGACCGAAGGCTACGTTTGGATTCTGACCGCCGCCGCCACGAATTTACTCGATTCCATGAATTCCTCTGTTCTAAACTCCATGGAAGGAGCTTTGGGAGTGAAGACGTACGTTCCCAAATCAACGGAGCTCGACACTTTCAAAATCAGATGGAAACGAAAATTCCTAATGGAAAATCCCATTCTCAACGACCCTCAATTAGACGTCTTCGGACTCTGGGCCTACGATGCAGCTCGAGCTCTGGCAATGGCGGTTGAGAAAACAGGGGCCAAAAATTTCACGTTCGAGAACCCGACTCGATCCGAAAATCTCACGGATCTTCAAACTCTGGGGGTTTCTCGAAACGGGGAGAAAATCCGAGACGCCTTGTCGAAGACGAAGTTCACAGGGCTGACCGGCGATTACGAGATCGTGAACGGGCAGCTGCAATCGGCGAGTTTCGAGATAGTGAATGTGAACAGTAATGGAGGAAACAGAGTTGGGTTGTTCAACAAGAACATGAGTTTGGTGGAGATGAGGCCGGTGATCTGGCCGGGGTACACGACGGCGAAGCCGAAAGGGTGGGAGTGGCCGACGGAGGGGAAGAGATTGAGAATCGGGGTTCCGGTGAAGGAAGGGTACAGTCAATTCGTGAAAGTGACAGGAAACGGGACGGTGGCAGAAGGGTATTGTACGGACGTGTTTAATGCGGCTATAGCGGCGCTTCCATACGCCGTCCCGTTTGATTATGTTCCCTTTGCATTACCGAATGGTTCCAGCGCCGGTTCCTACGACGAGCTCATCATGAAAGTTCACGAAGGGTTCTTCGACGGCGCAGTGGGAGACATAACGATCGTAGCAAACAGATCCAAGTTCGTGGACTTCACTCTGCCATTCACAGAATCGGGAGTTTCAATGGTGGTTCCAACGCAAGCGAACTCAAAAGACAGAGCATGGGTTTTCCTCAAGCCTCTGACTTTAGACCTCTGGATCACAAGCTTCTGCTTCTTCGTGTTCATGGGGTTCGTGGTCTGGATCCTTGAGCACCGAATCAACGAAGACTTTCGCGGCCCTCCGTCTCATCAGATCGGGACGAGTCTCTGGTTCTCGTTCTGCACCATGGTGTTCGCCCAAAGGGAGACTTTGATAAGCAATTTGGCGAGGTTCGTGGTGGTGATATGGTTCTTCGTGGTGTTCATTCTGACGCAGAGCTACACGGCGAGCTTGACGTCTCTGTTGACAGTGCAACAGTTGCAGCCGACCATTACGGACATAAACCAGCTGTTGAAGAACCAGCCATGGGTGGGGTACCAAGACGGTTCGTTTGTTTTCGGGCTGTTGAGCTCTGTGGGGATTAAGAATCTCAAGGCTTATGGGTCTCCTGAGGAACTGGACGAGCTGTTCAAACTGGGAAGCTCCAATGGCGGGATTGATGCTGCTTTTGATGAAATACCTTACGTTAAGCTCTTCCTTTCCATGTTTCCTGATAAGTACACCATGGCTGATCCCAACTACAAAACTGATGGATTTGGATTTGTGTTTCCACTTGGGTCACCATTAGTGGCAGACATATCAAGAGCAGTGTTAAACGTGACAGAAAGTGAGAAGATGAACCAAATACAAAAGAAATGGTTTGGAGATGAATGCAACTCGCCGTCTTCAGGCACAAAGGTCACTTCTTCACGCCTCAACCTCAGCAGCTTCTGGGGTCTCTTCCTCATCGCGGGCGCCGCCGCCATCATCGCCCTCCTCGCCTACTTCGTCATTTTCCTCTACAAAGAACAGCACACGCTCCGCCGCACCGCCGACGAAGAAGGCTCGAACTCCACCATTGGCCACAAAATTCGAGCGCTGCTCAGAGCTTACGACGGAAGAGACTTGACTTCACATACGTTCAGGAAGAGTAATCTTCCTCAGGCAGACAGCAAGATTCATGCGATGGACGGCGGCTCCGCCGAGGCCTCGCCGTGCTCGAACTACCCGCCGAGCCCGTCGAATTATTCGGTCCATGATACGAGCTTCGAGTTCTTCAGTGAGTCAGTGTATTCGAGTCCGAGGAACAATCAAGCTGTGGAAATGGTGGTGCAGGCTCCCCAAAACCAGGAGGCAGCGTTGGAAAATAATGGAGAAGAGATTATTGAAATTCATGTGAATAATAATTGA | 2886 | 51.84 | MKQNRANVRALCFIAGCVLLLGAAAAQNTSAVPVSVGVVLDMESWVGKMGLSCIDMSLSEFYEANPHYDTRIVLHPKDSAGDVVGAAAAALDLIKNNKVQAILGPTTSMQANFVIELGRKAHVPILTFTASSPALTSLRSPYFFRLTQNDSAQVAAISALVKFHNWNQIVPIYEDDEFGDGMLPYLIDALQGVNARVPYRSVISPAATGDQIGEELYKLMTMQTRVFVVHMLPSLAARLFAKAKEIGMMTEGYVWILTAAATNLLDSMNSSVLNSMEGALGVKTYVPKSTELDTFKIRWKRKFLMENPILNDPQLDVFGLWAYDAARALAMAVEKTGAKNFTFENPTRSENLTDLQTLGVSRNGEKIRDALSKTKFTGLTGDYEIVNGQLQSASFEIVNVNSNGGNRVGLFNKNMSLVEMRPVIWPGYTTAKPKGWEWPTEGKRLRIGVPVKEGYSQFVKVTGNGTVAEGYCTDVFNAAIAALPYAVPFDYVPFALPNGSSAGSYDELIMKVHEGFFDGAVGDITIVANRSKFVDFTLPFTESGVSMVVPTQANSKDRAWVFLKPLTLDLWITSFCFFVFMGFVVWILEHRINEDFRGPPSHQIGTSLWFSFCTMVFAQRETLISNLARFVVVIWFFVVFILTQSYTASLTSLLTVQQLQPTITDINQLLKNQPWVGYQDGSFVFGLLSSVGIKNLKAYGSPEELDELFKLGSSNGGIDAAFDEIPYVKLFLSMFPDKYTMADPNYKTDGFGFVFPLGSPLVADISRAVLNVTESEKMNQIQKKWFGDECNSPSSGTKVTSSRLNLSSFWGLFLIAGAAAIIALLAYFVIFLYKEQHTLRRTADEEGSNSTIGHKIRALLRAYDGRDLTSHTFRKSNLPQADSKIHAMDGGSAEASPCSNYPPSPSNYSVHDTSFEFFSESVYSSPRNNQAVEMVVQAPQNQEAALENNGEEIIEIHVNNN | 961 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 41285024 | 41291519 | - | Maker00025429 | Lcy13g2238 | 652543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy13g2238 | 961 | CDD | GluR_Plant | 443 | 786 | - | - | |
Lcy13g2238 | 961 | FunFam | Glutamate receptor | 444 | 559 | - | - | |
Lcy13g2238 | 961 | SMART | GluR_14 | 444 | 788 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lcy13g2238 | 961 | PIRSF | IGluLR_plant | 2 | 925 | IPR017103 | - | |
Lcy13g2238 | 961 | Gene3D | - | 445 | 558 | - | - | |
Lcy13g2238 | 961 | Gene3D | - | 693 | 792 | - | - | |
Lcy13g2238 | 961 | SUPERFAMILY | Periplasmic binding protein-like I | 33 | 427 | IPR028082 | - | |
Lcy13g2238 | 961 | Gene3D | - | 559 | 679 | - | - | |
Lcy13g2238 | 961 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 34 | 858 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Lcy13g2238 | 961 | FunFam | Glutamate receptor | 559 | 689 | - | - | |
Lcy13g2238 | 961 | SUPERFAMILY | Periplasmic binding protein-like II | 422 | 789 | - | - | |
Lcy13g2238 | 961 | FunFam | Glutamate receptor 2.7 | 694 | 794 | - | - | |
Lcy13g2238 | 961 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 504 | 567 | IPR001638 | - | |
Lcy13g2238 | 961 | Gene3D | - | 151 | 315 | - | - | |
Lcy13g2238 | 961 | CDD | PBP1_GABAb_receptor_plant | 35 | 421 | IPR044440 | - | |
Lcy13g2238 | 961 | Pfam | Receptor family ligand binding region | 53 | 402 | IPR001828 | - | |
Lcy13g2238 | 961 | FunFam | Glutamate receptor | 155 | 313 | - | - | |
Lcy13g2238 | 961 | Gene3D | - | 359 | 444 | - | - | |
Lcy13g2238 | 961 | Pfam | Ligand-gated ion channel | 788 | 819 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0164 | Lcy-Chr13:1705161 | Lcy13g2238 | Lcy-Chr13:41285024 | 1.50E-281 | dispersed | |
Lcy13g1865 | Lcy-Chr13:37547779 | Lcy13g2238 | Lcy-Chr13:41285024 | 3.03E-295 | dispersed | |
Lcy13g1866 | Lcy-Chr13:37547779 | Lcy13g2238 | Lcy-Chr13:41285024 | 1.16e-317 | dispersed | |
Lcy13g2055 | Lcy-Chr13:39479879 | Lcy13g2238 | Lcy-Chr13:41285024 | 5.90E-248 | dispersed | |
Lcy13g2238 | Lcy-Chr13:41285024 | Lcy2g0238 | Lcy-Chr2:1871773 | 1.33E-210 | dispersed | |
Lcy13g2238 | Lcy-Chr13:41285024 | Lcy13g1870 | Lcy-Chr13:37571813 | 5.03E-287 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy13g2238 | K05387 | - | csv:101205977 | 1401.73 |