Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2238 ATGAAACAAAATCGGGCCAACGTTCGGGCTCTGTGTTTTATTGCAGGTTGCGTTTTGTTGTTGGGTGCGGCGGCGGCTCAGAATACGAGCGCCGTGCCGGTGAGCGTCGGGGTGGTGCTGGATATGGAGAGTTGGGTTGGGAAGATGGGGTTGAGTTGTATCGACATGTCGCTGTCGGAATTCTATGAAGCCAATCCTCACTACGACACCAGAATTGTTCTTCATCCCAAAGATTCCGCCGGCGATGTCGTCGGAGCGGCGGCTGCAGCTCTTGACCTGATAAAGAACAACAAAGTTCAAGCAATTCTGGGACCAACGACTTCGATGCAAGCCAATTTCGTGATCGAGCTCGGCCGGAAAGCTCATGTCCCCATTCTCACCTTCACTGCTTCCAGCCCCGCTCTCACCTCCCTCCGCAGCCCTTACTTCTTCCGCCTCACTCAAAACGACTCCGCTCAGGTCGCCGCGATTAGCGCCCTTGTCAAATTCCACAACTGGAATCAGATTGTTCCTATTTACGAGGACGACGAATTCGGGGACGGGATGTTACCGTACTTGATCGACGCGCTGCAGGGTGTGAATGCGCGCGTGCCGTACCGGAGTGTCATCAGTCCGGCGGCCACCGGCGATCAGATAGGAGAAGAGCTTTACAAATTGATGACGATGCAGACGAGAGTGTTCGTGGTGCACATGCTGCCCTCTCTCGCAGCTCGGCTATTCGCCAAGGCGAAGGAAATCGGAATGATGACCGAAGGCTACGTTTGGATTCTGACCGCCGCCGCCACGAATTTACTCGATTCCATGAATTCCTCTGTTCTAAACTCCATGGAAGGAGCTTTGGGAGTGAAGACGTACGTTCCCAAATCAACGGAGCTCGACACTTTCAAAATCAGATGGAAACGAAAATTCCTAATGGAAAATCCCATTCTCAACGACCCTCAATTAGACGTCTTCGGACTCTGGGCCTACGATGCAGCTCGAGCTCTGGCAATGGCGGTTGAGAAAACAGGGGCCAAAAATTTCACGTTCGAGAACCCGACTCGATCCGAAAATCTCACGGATCTTCAAACTCTGGGGGTTTCTCGAAACGGGGAGAAAATCCGAGACGCCTTGTCGAAGACGAAGTTCACAGGGCTGACCGGCGATTACGAGATCGTGAACGGGCAGCTGCAATCGGCGAGTTTCGAGATAGTGAATGTGAACAGTAATGGAGGAAACAGAGTTGGGTTGTTCAACAAGAACATGAGTTTGGTGGAGATGAGGCCGGTGATCTGGCCGGGGTACACGACGGCGAAGCCGAAAGGGTGGGAGTGGCCGACGGAGGGGAAGAGATTGAGAATCGGGGTTCCGGTGAAGGAAGGGTACAGTCAATTCGTGAAAGTGACAGGAAACGGGACGGTGGCAGAAGGGTATTGTACGGACGTGTTTAATGCGGCTATAGCGGCGCTTCCATACGCCGTCCCGTTTGATTATGTTCCCTTTGCATTACCGAATGGTTCCAGCGCCGGTTCCTACGACGAGCTCATCATGAAAGTTCACGAAGGGTTCTTCGACGGCGCAGTGGGAGACATAACGATCGTAGCAAACAGATCCAAGTTCGTGGACTTCACTCTGCCATTCACAGAATCGGGAGTTTCAATGGTGGTTCCAACGCAAGCGAACTCAAAAGACAGAGCATGGGTTTTCCTCAAGCCTCTGACTTTAGACCTCTGGATCACAAGCTTCTGCTTCTTCGTGTTCATGGGGTTCGTGGTCTGGATCCTTGAGCACCGAATCAACGAAGACTTTCGCGGCCCTCCGTCTCATCAGATCGGGACGAGTCTCTGGTTCTCGTTCTGCACCATGGTGTTCGCCCAAAGGGAGACTTTGATAAGCAATTTGGCGAGGTTCGTGGTGGTGATATGGTTCTTCGTGGTGTTCATTCTGACGCAGAGCTACACGGCGAGCTTGACGTCTCTGTTGACAGTGCAACAGTTGCAGCCGACCATTACGGACATAAACCAGCTGTTGAAGAACCAGCCATGGGTGGGGTACCAAGACGGTTCGTTTGTTTTCGGGCTGTTGAGCTCTGTGGGGATTAAGAATCTCAAGGCTTATGGGTCTCCTGAGGAACTGGACGAGCTGTTCAAACTGGGAAGCTCCAATGGCGGGATTGATGCTGCTTTTGATGAAATACCTTACGTTAAGCTCTTCCTTTCCATGTTTCCTGATAAGTACACCATGGCTGATCCCAACTACAAAACTGATGGATTTGGATTTGTGTTTCCACTTGGGTCACCATTAGTGGCAGACATATCAAGAGCAGTGTTAAACGTGACAGAAAGTGAGAAGATGAACCAAATACAAAAGAAATGGTTTGGAGATGAATGCAACTCGCCGTCTTCAGGCACAAAGGTCACTTCTTCACGCCTCAACCTCAGCAGCTTCTGGGGTCTCTTCCTCATCGCGGGCGCCGCCGCCATCATCGCCCTCCTCGCCTACTTCGTCATTTTCCTCTACAAAGAACAGCACACGCTCCGCCGCACCGCCGACGAAGAAGGCTCGAACTCCACCATTGGCCACAAAATTCGAGCGCTGCTCAGAGCTTACGACGGAAGAGACTTGACTTCACATACGTTCAGGAAGAGTAATCTTCCTCAGGCAGACAGCAAGATTCATGCGATGGACGGCGGCTCCGCCGAGGCCTCGCCGTGCTCGAACTACCCGCCGAGCCCGTCGAATTATTCGGTCCATGATACGAGCTTCGAGTTCTTCAGTGAGTCAGTGTATTCGAGTCCGAGGAACAATCAAGCTGTGGAAATGGTGGTGCAGGCTCCCCAAAACCAGGAGGCAGCGTTGGAAAATAATGGAGAAGAGATTATTGAAATTCATGTGAATAATAATTGA 2886 51.84 MKQNRANVRALCFIAGCVLLLGAAAAQNTSAVPVSVGVVLDMESWVGKMGLSCIDMSLSEFYEANPHYDTRIVLHPKDSAGDVVGAAAAALDLIKNNKVQAILGPTTSMQANFVIELGRKAHVPILTFTASSPALTSLRSPYFFRLTQNDSAQVAAISALVKFHNWNQIVPIYEDDEFGDGMLPYLIDALQGVNARVPYRSVISPAATGDQIGEELYKLMTMQTRVFVVHMLPSLAARLFAKAKEIGMMTEGYVWILTAAATNLLDSMNSSVLNSMEGALGVKTYVPKSTELDTFKIRWKRKFLMENPILNDPQLDVFGLWAYDAARALAMAVEKTGAKNFTFENPTRSENLTDLQTLGVSRNGEKIRDALSKTKFTGLTGDYEIVNGQLQSASFEIVNVNSNGGNRVGLFNKNMSLVEMRPVIWPGYTTAKPKGWEWPTEGKRLRIGVPVKEGYSQFVKVTGNGTVAEGYCTDVFNAAIAALPYAVPFDYVPFALPNGSSAGSYDELIMKVHEGFFDGAVGDITIVANRSKFVDFTLPFTESGVSMVVPTQANSKDRAWVFLKPLTLDLWITSFCFFVFMGFVVWILEHRINEDFRGPPSHQIGTSLWFSFCTMVFAQRETLISNLARFVVVIWFFVVFILTQSYTASLTSLLTVQQLQPTITDINQLLKNQPWVGYQDGSFVFGLLSSVGIKNLKAYGSPEELDELFKLGSSNGGIDAAFDEIPYVKLFLSMFPDKYTMADPNYKTDGFGFVFPLGSPLVADISRAVLNVTESEKMNQIQKKWFGDECNSPSSGTKVTSSRLNLSSFWGLFLIAGAAAIIALLAYFVIFLYKEQHTLRRTADEEGSNSTIGHKIRALLRAYDGRDLTSHTFRKSNLPQADSKIHAMDGGSAEASPCSNYPPSPSNYSVHDTSFEFFSESVYSSPRNNQAVEMVVQAPQNQEAALENNGEEIIEIHVNNN 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41285024 41291519 - Maker00025429 Lcy13g2238 652543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2238 961 CDD GluR_Plant 443 786 - -
Lcy13g2238 961 FunFam Glutamate receptor 444 559 - -
Lcy13g2238 961 SMART GluR_14 444 788 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy13g2238 961 PIRSF IGluLR_plant 2 925 IPR017103 -
Lcy13g2238 961 Gene3D - 445 558 - -
Lcy13g2238 961 Gene3D - 693 792 - -
Lcy13g2238 961 SUPERFAMILY Periplasmic binding protein-like I 33 427 IPR028082 -
Lcy13g2238 961 Gene3D - 559 679 - -
Lcy13g2238 961 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 858 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy13g2238 961 FunFam Glutamate receptor 559 689 - -
Lcy13g2238 961 SUPERFAMILY Periplasmic binding protein-like II 422 789 - -
Lcy13g2238 961 FunFam Glutamate receptor 2.7 694 794 - -
Lcy13g2238 961 Pfam Bacterial extracellular solute-binding proteins, family 3 504 567 IPR001638 -
Lcy13g2238 961 Gene3D - 151 315 - -
Lcy13g2238 961 CDD PBP1_GABAb_receptor_plant 35 421 IPR044440 -
Lcy13g2238 961 Pfam Receptor family ligand binding region 53 402 IPR001828 -
Lcy13g2238 961 FunFam Glutamate receptor 155 313 - -
Lcy13g2238 961 Gene3D - 359 444 - -
Lcy13g2238 961 Pfam Ligand-gated ion channel 788 819 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0164 Lcy-Chr13:1705161 Lcy13g2238 Lcy-Chr13:41285024 1.50E-281 dispersed
Lcy13g1865 Lcy-Chr13:37547779 Lcy13g2238 Lcy-Chr13:41285024 3.03E-295 dispersed
Lcy13g1866 Lcy-Chr13:37547779 Lcy13g2238 Lcy-Chr13:41285024 1.16e-317 dispersed
Lcy13g2055 Lcy-Chr13:39479879 Lcy13g2238 Lcy-Chr13:41285024 5.90E-248 dispersed
Lcy13g2238 Lcy-Chr13:41285024 Lcy2g0238 Lcy-Chr2:1871773 1.33E-210 dispersed
Lcy13g2238 Lcy-Chr13:41285024 Lcy13g1870 Lcy-Chr13:37571813 5.03E-287 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2238 K05387 - csv:101205977 1401.73