Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2242 ATGCGGCGCCCCCCCTTGTTGAAGCTTATTATGGCCACTGTGATTGCAGCTGCGAGCTGCTGCTGTGTCAATGGAGATTGGTTGGTCGGCGTCGGGAGCTTCGACATGACTGGCCCTGCTGCTCAAGTGAACATGATGGGCTATGCCAATATGGACCAGAACACTGCAGGGGTTCATTTTAGGCTTAGAGCGAGGACTTTTGTTGTTGCCAAAAGTGTCGATGGGCCAAGATTTGCATTTGTTAATTTGGATGCTGGGATGGCTTCGCAGTTGGTCACCATTAAAGTGCTCGAGAGGCTCAAATCTAGGAGCCCGAGTGCTTACCTTTTGAACCCACAAGAGGAACGAGCTCGATATTCAACCAATGTCGATACGGAAATGACTGTTTTGAAGTTTGTTGATGGAGCGAGTGGGAAGAGCGTTGGGGCGTTCAGCTGGTTCCCTACGCATGGGACTTCGATGAGCAGAGATAATAAGCTCATCAGTGGGGATAATAAGGGCGCTGCTGCCAGGTTCTTTGAGGATTGGATCGCCTCTAAACGTACCAAAAGGTCCTCCAATGCATCAGATATTGTGGAGTTGATGAAGAAAGCAGAGACGATAAAGGCGACAGGAGGGAAGCGCTGCAGCAGAGCAAGTAGCCAAGCATCCAAAGTGAGAAACAACGACGGATCTCTCTTCGTAGCAGCATTTTGCCAATCCAACGTCGGCGACGTCACGCCCAACGTACTCGGCGCATTCTGCACCGATTCAGGAAACCCCTGCGACTTCAATCGCTCCTCTTGCCACGGCAACGACTTGCTCTGCGTCGGGCGCGGCCCTGGGTTTCCAGACGAAATTCTGAGCACGAAGATCATTGGGGAGAGGCAGTTCCTCAAGGCAGCTGATTTGTTCACCACGGCAACGGAAAAACTCACTGGAGAGATCGATTTTCGCCATGTGTATCTGAATTTTACGGACATCGAAGTGGAATTGGATGGGAATGATGTTGTCAGGACATGCCCAGCTGCCCTCGGCCCTGGCTTTGCCGCTGGAACTACGGATGGCCCTGGTGTGTTTGGCTTTCAACAGGGTGACACTAAGATCAATGAATTGTGGAGGAAGCTGCGAGATTCGTTGAGGAAACCGAGCGAGTTTCAGGTGGGCTGTCAGAAGCCGAAGACGGTTTTGTTGGACACGGGCGAGATGTTTGAACCTTATGCTTGGGCGCCAGCCATTCTTCCAATTCAAATTCTCAGGCTAGGAAAACTGATCATACTATCTGTACCCGGAGAGTTCACAACAATGGCGGGGCGAAGGCTGAGGGAAGCAGTAAAGGAAACTCTAATTAGCAATGGAAATGGAGAGTTTGGTGATGACACTCATGTCGTAATTGCAGGGCTTACAAATACATACTCCCAATATGTTGCTACTTTTGAAGAATATGAACAACAACGATATGAAGCTGCTTCAACCCTCTATGGACCACACACTCTATCAGCATACATTCAAGAGTTCAAGAAATTAGCAACAGCAATAGCAAAAGGTGAAAACATTGTCAAGCCAATCGCCTCGCCGCCGGACCTTTCGTCTGTCCAGCTCCGATTTGTATTAGAACCTTTCGGGGAATCGCCACCGAATGGCATCAACTTCGGAGACATCCAACAGGACATCAAATTACCAAAAACTGGCTGGTTCAAAAGAGGAGAGAAACAGAAACCAACTGCCACATTTTGGACTGCAAACCCGAGATTCGACCTCTTGACCGAAGGTACATATGCCGTGGTTGAAAGGCTAGAGAAACAGCAATGGAAACCGACTTACGATGACGATGATTTCTCCTTGCTTTTTAGATGGACATTAGACAACGACACATTCATCAACAGCTTAGCGACTATTGAATGGGACATCCCGATAGATGCCCTTCCAGGTGTGTATCGGTTACGACACTTTGGATCATCTAAGACGACGACAAACTCAAGCAACATATATTTTAGTGGGGCTTCTCGTGCATTTGCAGTGATGTAA 2007 48.73 MRRPPLLKLIMATVIAAASCCCVNGDWLVGVGSFDMTGPAAQVNMMGYANMDQNTAGVHFRLRARTFVVAKSVDGPRFAFVNLDAGMASQLVTIKVLERLKSRSPSAYLLNPQEERARYSTNVDTEMTVLKFVDGASGKSVGAFSWFPTHGTSMSRDNKLISGDNKGAAARFFEDWIASKRTKRSSNASDIVELMKKAETIKATGGKRCSRASSQASKVRNNDGSLFVAAFCQSNVGDVTPNVLGAFCTDSGNPCDFNRSSCHGNDLLCVGRGPGFPDEILSTKIIGERQFLKAADLFTTATEKLTGEIDFRHVYLNFTDIEVELDGNDVVRTCPAALGPGFAAGTTDGPGVFGFQQGDTKINELWRKLRDSLRKPSEFQVGCQKPKTVLLDTGEMFEPYAWAPAILPIQILRLGKLIILSVPGEFTTMAGRRLREAVKETLISNGNGEFGDDTHVVIAGLTNTYSQYVATFEEYEQQRYEAASTLYGPHTLSAYIQEFKKLATAIAKGENIVKPIASPPDLSSVQLRFVLEPFGESPPNGINFGDIQQDIKLPKTGWFKRGEKQKPTATFWTANPRFDLLTEGTYAVVERLEKQQWKPTYDDDDFSLLFRWTLDNDTFINSLATIEWDIPIDALPGVYRLRHFGSSKTTTNSSNIYFSGASRAFAVM 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41356013 41362652 - Maker00025197 Lcy13g2242 652547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2242 668 Gene3D - 534 668 IPR038445 -
Lcy13g2242 668 Pfam Neutral/alkaline non-lysosomal ceramidase, C-terminal 499 667 IPR031331 -
Lcy13g2242 668 PANTHER CERAMIDASE 102 667 IPR006823 GO:0005576(PANTHER)|GO:0017040(PANTHER)|GO:0017040(InterPro)|GO:0042759(PANTHER)|GO:0046512(PANTHER)|GO:0046514(InterPro)|GO:0046514(PANTHER)
Lcy13g2242 668 FunFam Neutral/alkaline non-lysosomal ceramidase 533 668 - -
Lcy13g2242 668 Pfam Neutral/alkaline non-lysosomal ceramidase, N-terminal 102 497 IPR031329 -
Lcy13g2242 668 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2242 K12349 - - csv:101206698 1016.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0128 Lcy-Chr11:1396389 Lcy13g2242 Lcy-Chr13:41356013 2.48E-236 dispersed
Lcy13g2242 Lcy-Chr13:41356013 Lcy8g1777 Lcy-Chr8:44233173 3.09E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g132 . . Bda01g00717 . . . . . Cmo05g01014 . . . . . . . . Bhi04g01549 . . . Hepe08g1468 . Lcy13g2242 Cla08g00967 Cam08g1416 Cec08g0995 Cco08g1118 Clacu08g1119 . Cre08g0903 . . . Cone20ag0044 . . . Cme03g01363 . Blo18g00754 . Bda01g01551 Bpe02g01747 . Bma01g00710 . . . . . Cma05g00996 Car05g00878 . Cpe11g00805 . . . . . . . . . . . . . . . Lsi08g00809 . Chy03g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012388 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29