Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2248 ATGGGCTGCTGTGGATCGTCCTTACAGAGAGCTCAAAACCTTGGATTAGGAGGTAAAAGCAACCATATCCCTCATGCCCAAAACAATTTCCAATCTCATCCTTCTAATGGCCCTTCCGATCCCGCCGCCGCCGCCGCCACCGGCGGCATCCCTGCTTTCTCCGAGTTCTCCTTAGCCGACCTCAAGGCCGCTACCAACAACTTCAGCTCCGATTACATCGTCTCCGAGAGCGGCGAGAAAGCCCTCAATGTCGTCTACAAAGGCCGCCTTCAGAACCAGAACAATCGCCGTTGGATCGCCGTCAAGAAGTTCCCTAAGTTGGCTTGGCCCGACCCCAAGCAGTTCGCTGAAGAAGCATCTGGGGTCGGTAAATTGAGGCATAAAAGATTGGCGAATCTCATTGGGTATTGCTGTGAAGGCGACGAGAGGCTTCTTGTTGGGGAGTTTATGCCCAATGACACCCTCGCCAAGCATCTCTTCCACTGGGAGAATCAAACCATTGAGTGGGCTATGAGATTGAGAGTTGCTTTATATATTGCTGAAGCATTAGACTATTGTAGCTCTCAGGAACGTCCATTGTACCACGACTTGAATGCGTATCGGGTTCTATTTGATGAGAATGGTGACCCTCGACTTTCTTGTTTTGGATTGATGAAAAACAGCAGGGATGGTAAAAGTTATAGCACCAATCTTGCGTATACTCCACCTGAATATTTAAGAAATGGGAGAGTGACGGCAGAAAGTGTCATTTTTAGCTTTGGAACTGTCCTCTTAGATCTACTAAGTGGGAAGCACATCCCTCCTAGTCATGCACTCGATATGATACGAGGCAAAAACATTCTTCTCTTAATGGATTCACATTTGGAGGGTAACTTTTCAACTGCAGAGGCAACTGTGGTTTTTGATCTTGCTTCACGATGCTTACAATATGAACCTCGGGATCGACCAAATACCAAGGACCTTGTTGCGACCCTTGCCCCCTTACAAAATAAACCTGATGTTCCATCTTATGTGATGCTAGGAATTCCAAAACATGAGGAAGCACCTCCAACTCCACAACATCCTCTCACCCCAATGGGCGATGCTTGTGCAAGGATGGATCTCACTGCTATCCATCAGATTTTGATAATGACACACTACAAAGACGACGAAGGAACAAATGAGTTGTCTTTCCAAGAATGGACCCAACAAATGAGAGATATGTTGGAGGCAAGGAAGCGTGGGGACTTGGCATTTCGTGACAAAGATTTTAAAACAGCAATTGACTGTTATTCTCAGTTTATAGATGTTGGTACCATGGTTTCTCCCACTGTTTATGCGCGAAGGAGTCTGTGTTATCTTCTTTGCGACCAACCAGATGCTGCTCTTCGAGACGCCATGCAAGCCCAATGTGTTTACCCTGACTGGTCCACGTCATTTTACATGCAGGCCGTTGCGCTTGCCAAGCTAGATATGCATAAGGACGCGGCTGACATGTTGAACGAGGCTGCTGCTTTGGAAGAGAAACGGCAAAAAGGCGGAAGGGGATCTTAA 1533 47.16 MGCCGSSLQRAQNLGLGGKSNHIPHAQNNFQSHPSNGPSDPAAAAATGGIPAFSEFSLADLKAATNNFSSDYIVSESGEKALNVVYKGRLQNQNNRRWIAVKKFPKLAWPDPKQFAEEASGVGKLRHKRLANLIGYCCEGDERLLVGEFMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSQERPLYHDLNAYRVLFDENGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTAESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNILLLMDSHLEGNFSTAEATVVFDLASRCLQYEPRDRPNTKDLVATLAPLQNKPDVPSYVMLGIPKHEEAPPTPQHPLTPMGDACARMDLTAIHQILIMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDLAFRDKDFKTAIDCYSQFIDVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPDWSTSFYMQAVALAKLDMHKDAADMLNEAAALEEKRQKGGRGS 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41427446 41432305 - Maker00025206 Lcy13g2248 652553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2248 510 FunFam probable serine/threonine-protein kinase At5g41260 151 342 - -
Lcy13g2248 510 SUPERFAMILY TPR-like 404 501 IPR011990 GO:0005515(InterPro)
Lcy13g2248 510 Pfam Protein tyrosine and serine/threonine kinase 78 325 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g2248 510 FunFam probable serine/threonine-protein kinase At4g35230 43 149 - -
Lcy13g2248 510 Gene3D Tetratricopeptide repeat domain 399 508 IPR011990 GO:0005515(InterPro)
Lcy13g2248 510 MobiDBLite consensus disorder prediction 15 38 - -
Lcy13g2248 510 Gene3D Transferase(Phosphotransferase) domain 1 151 341 - -
Lcy13g2248 510 Gene3D Phosphorylase Kinase; domain 1 45 149 - -
Lcy13g2248 510 FunFam probable serine/threonine-protein kinase At4g35230 399 508 - -
Lcy13g2248 510 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2248 510 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 43 505 IPR045845 GO:0004672(InterPro)|GO:0009742(PANTHER)|GO:0009742(InterPro)
Lcy13g2248 510 MobiDBLite consensus disorder prediction 15 45 - -
Lcy13g2248 510 SUPERFAMILY Protein kinase-like (PK-like) 53 335 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2248 K14500 - - csv:101213531 970.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2248 Lcy-Chr13:41427446 Lcy10g1863 Lcy-Chr10:42843506 3.75E-44 dispersed
Lcy11g1847 Lcy-Chr11:42268176 Lcy13g2248 Lcy-Chr13:41427446 4.65E-196 transposed
Lcy12g1655 Lcy-Chr12:36911039 Lcy13g2248 Lcy-Chr13:41427446 5.00E-201 transposed
Lcy1g1520 Lcy-Chr1:14994199 Lcy13g2248 Lcy-Chr13:41427446 2.45E-169 transposed
Lcy4g1985 Lcy-Chr4:46251695 Lcy13g2248 Lcy-Chr13:41427446 3.35E-11 transposed
Lcy6g0863 Lcy-Chr6:8725211 Lcy13g2248 Lcy-Chr13:41427446 8.94E-204 transposed
Lcy8g1779 Lcy-Chr8:44247066 Lcy13g2248 Lcy-Chr13:41427446 3.07E-216 transposed
Lcy13g2248 Lcy-Chr13:41427446 Lcy8g1293 Lcy-Chr8:39562743 2.39E-279 wgd
Lcy13g2248 Lcy-Chr13:41427446 Lcy9g2308 Lcy-Chr9:47473467 2.09E-267 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g122 . Blo12g00863 . Bda03g00310 Bpe02g00322 Bpe04g00271 Bma04g00277 Bma01g02396 Cmo05g01010 Cmo12g00606 Cma01g02004 Cma09g00065 Car01g01574 Car12g00648 . Cpe06g00032 Cpe07g00582 Bhi04g01558 . . . . . Lcy13g2248 Cla08g00963 . . . . . . Cone4ag2009 Cone7ag1925 Cone17ag1441 Cone20ag0036 Lsi04g01794 Csa04g02688 . Cme03g01357 . . Bda11g00958 . . . . . . Cmo01g02063 Cmo09g00065 Cma12g00667 Cma05g00992 Car05g00874 Car09g00057 Cpe11g00801 Cpe02g00044 Bhi09g02923 . . . . Mch11g0067 . Cla05g01573 Cam05g1682 . Cco05g1732 . . . Lsi08g00803 . Chy07g00379 Cme07g00068
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65593 None None None None Lcy PK