Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2249 ATGGGCTGCGCCACCTCCAAGCTCGACAACCTCCCGGCGGTGGCTCTCTGCCGTGACCGTTGCAAATTTCTCGAACAAGCTCTGACTTTTACCCATACCCTTATCGATTCCCACTCTGCCTATGCTGACTCACTCAACAAAATCGCCTCCGCTCTCCGCCGTTTGTTTGACCAAGACGGTCCCGACGGCGGCGATTTGAAATGTCCTCCGCCGGTTGCTGCCGTATTGTTTGATCGATCTTCTTCCAGCTCCGATTCGGATTCCGATTCCGATTCCGAAGAAGTGGAAGATGGGTGTTTTACTCAAGAGAAACCGCAGAATTTCATGTTCTCGAATTACGACTCGGCCAGGGGACAGCCGCCGCCGCCGCCGCCGACCGGCTCATCGTGGGATTTCTTCAATTTCTTCGAAACCTACGAGAGATACGAGCAACCCATTTTCAATTGGGACCGCGAAGGAGCAGATCAGAAATCTGGAACAAGAAAAGTTGTGGCGAAGAAGAAGAAGAAACAGGCGGTGGTTGTTGAATCGAAGAAACATGAGGAAGCCGAGAAATTAAACCAACCGGAAAAGAAGAACCATGAATCGAAGATGGGTGTGTTCGATGTGATGAGTGAAATCAAGGGCTCGTTTGAAAAGGCATCTGAATCCAGCAATTCCATTTCAAAATTGCTTTCTTATGGTCAAAGAATGAGTTTTTGTAAAGATACAAGGACGGGCTCGCGAGGCTTATTGTCGACTTTGAAGAAGCTGTGTGTTTGGGAGCAGAAACTGTACCTGGAAGTGAAGGCTGAGGAGAGATTGCGTATGGTTTTGGAGAAGAAGTGCCGGCAGCTGAAGAATTTGGTGGAGAAGAAATCCGATGCTCGGAAAGTTGAATCCATTCGGAATCTGATCAGAGATTTGTCGATCAAATTGAAAGTTTCGATTCAGGTGGTCGATAGGATTTCGATTACCATTAGCAAGTTGAGGGATGAAGAGTTCTTAGCAGAGATGAACGAATTGATTCATGGGTATGTGATGATTCATTTCCTTTCATCTTGTTTGAATGTCAGAATTGGTCAACTTTCAAAACCAAACCAAAAACAAGTCCTTGAGTCAATGCTTTGTCTTCTTCTTCTCAACAGATTGCTGAGCATGTGGAAAGCCATGTCCGACACTCACAAGCAACAAACCCAAGCACTGACAGACCCCAAACCCTTCGAATCAGTCCTCAACGGCACTCTCGACGACGCTCATCTCGAAGCCGCCATGGATCTAAAACTCGAGCTCGAGAATTGGAGATCAAATTTCATCAATTTAATCACGACCCAGAAGGACTGCGTCAAAGCCCTCAACGGTTGGCTTCTCCGCTGCCTTCTCTACGAACCCGAGCCCGAAGAAACCCCCAACGCCGCCTGTCCGCCGCCGTTCTCTCCGGCCAGAATCGGCGCCCCGCCTGTGTTCGTAATCGCCCACCTCTGGTCCGACGCCGCCGACAAATTCTCCGACAAGGACGTCTCTGAGGCCATACAGGGGCTCGTCTCGAATCTGGATCAGGCGTTGGAACAGCAGAGTTCGGATTTGCAGAGATTGGCGCTTGTGAATAGAGATTTGGAGAAGAAGATTAGGATTAAGAAGACGAGTAATCAAGGTTTTGAGGAGAAGACGATGGCGGTGACGGCGGGGGCTGTTCATAAAGTGGGTAAGTTTAGTGGCTGTGAGATTCAAATGGGGCTGAGGCAGATTTTTGTGGGGTTGACGAGGTTTTGTGGAGACTCCGTTGCAGCTTACGAGGAGCTTTGTTCTTCAGCCATGGAAGAAAGTTCTCGAACCAGAGAGAAACAGGAACAGAGCCAGGCCCATAGCTAG 1851 49.05 MGCATSKLDNLPAVALCRDRCKFLEQALTFTHTLIDSHSAYADSLNKIASALRRLFDQDGPDGGDLKCPPPVAAVLFDRSSSSSDSDSDSDSEEVEDGCFTQEKPQNFMFSNYDSARGQPPPPPPTGSSWDFFNFFETYERYEQPIFNWDREGADQKSGTRKVVAKKKKKQAVVVESKKHEEAEKLNQPEKKNHESKMGVFDVMSEIKGSFEKASESSNSISKLLSYGQRMSFCKDTRTGSRGLLSTLKKLCVWEQKLYLEVKAEERLRMVLEKKCRQLKNLVEKKSDARKVESIRNLIRDLSIKLKVSIQVVDRISITISKLRDEEFLAEMNELIHGYVMIHFLSSCLNVRIGQLSKPNQKQVLESMLCLLLLNRLLSMWKAMSDTHKQQTQALTDPKPFESVLNGTLDDAHLEAAMDLKLELENWRSNFINLITTQKDCVKALNGWLLRCLLYEPEPEETPNAACPPPFSPARIGAPPVFVIAHLWSDAADKFSDKDVSEAIQGLVSNLDQALEQQSSDLQRLALVNRDLEKKIRIKKTSNQGFEEKTMAVTAGAVHKVGKFSGCEIQMGLRQIFVGLTRFCGDSVAAYEELCSSAMEESSRTREKQEQSQAHS 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41441293 41443738 - Maker00025253 Lcy13g2249 652554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2249 616 MobiDBLite consensus disorder prediction 174 194 - -
Lcy13g2249 616 Coils Coil 262 289 - -
Lcy13g2249 616 Coils Coil 515 535 - -
Lcy13g2249 616 PANTHER UNCHARACTERIZED 1 601 - -
Lcy13g2249 616 MobiDBLite consensus disorder prediction 79 98 - -
Lcy13g2249 616 Pfam Protein of unknown function (DUF632) 373 511 IPR006867 -
Lcy13g2249 616 Pfam Protein of unknown function (DUF632) 236 340 IPR006867 -
Lcy13g2249 616 Pfam Protein of unknown function (DUF630) 1 58 IPR006868 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2249 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2249 Lcy-Chr13:41441293 Lcy4g0347 Lcy-Chr4:4377162 7.06E-63 dispersed
Lcy13g2249 Lcy-Chr13:41441293 Lcy8g1294 Lcy-Chr8:39573497 5.82E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g121 . . . . . . . . Cmo05g01009 . . . . . Sed11g0843 . . Bhi04g01560 Tan02g1536 Cmetu03g1244 . Hepe08g1485 . Lcy13g2249 Cla08g00962 . . . . . . . . Cone17ag1442 Cone20ag0035 . . . Cme03g01356 . . . . . . . . . . . . Cma05g00991 Car05g00873 . Cpe11g00800 . . . . . . . . . . . . . . . Lsi08g00802 . Chy03g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012946 0 1 0 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 28