Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2262 ATGAGTTGCTTTTCTTGTATTAGTCCTCGTACCAAAGAGGGGAGCAGGGTCGAAATTGATAATGGTGTTCGATTTATTTCCGCGAATTCTCCAAATTCCTCAGATACATGTAGGGGAAAAGAAGCTCAGGAAAACAGTGAAAGCTGTCCAAAGGGGAGCGTTGCTGCTCGTAGTTTCACGTTCCGTGAACTCGCCACAGCCACAAGAGGTTTCAAGGAAGTGAATTTGATTGGAGAGGGTGGTTTTGGACGTGTCTACAAAGGACGTTTGGAAACAGGACAGATTGCTGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAGGAGTTTATTGTAGAGGTTCTCATGTTGAGCTTGTTGCACCATCCCAATCTCGTCACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCTATGGGAAGCCTGGAAGATCATCTTTTTGATTTGGGTTCTGACAAAGAGCCACTGAATTGGAGTACAAGAATCAAGATTGCAGTTGCTGCTGCCCGAGGCCTTGAGTATCTCCACTGTAAAGCAGATCCCCCTGTCATATACCGTGACTTGAAATCAGCTAATATCTTGTTGGACAACGACTTTAATCCAAAGCTTTCAGATTTTGGACTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCGACCAGAGTAATGGGAACATATGGCTATTGTGCTCCAGAGTACGCCATGAGTGGCAAATTGACTCTTAAATCTGATATTTACAGCTTTGGTGTGGTTCTGCTTGAGCTTATTACAGGGCGTAAGGTAATTGATACTACAAGGAGACCGGGGGAGCAGAACCTAGTTGCTTGGTCTCGTCCTTTCCTGAAGGACCGCAGAAAGTTCATGCAAATAGTCGATCCCCTGTTGGAAGGACACTTCCCTCCTCGTTGTTTGCAACATGCAGTTGCAATTACTGCTATGTGTCTTCAAGAACAACCATCATTTCGCCCTCTTATTAGTGATATTGTTGTAGCACTCGAATATTTGGCCTCTCAGAGTCATTTACAAGAACAACGCAATGGTTGGACTCACAGTTCGTCACAGTCATCACAGTCGTCACCTTCACAACAGAATAAAACCACCAACGGCCAGGAATCAAATCCCTGA 1161 44.44 MSCFSCISPRTKEGSRVEIDNGVRFISANSPNSSDTCRGKEAQENSESCPKGSVAARSFTFRELATATRGFKEVNLIGEGGFGRVYKGRLETGQIAAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLGSDKEPLNWSTRIKIAVAAARGLEYLHCKADPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKVIDTTRRPGEQNLVAWSRPFLKDRRKFMQIVDPLLEGHFPPRCLQHAVAITAMCLQEQPSFRPLISDIVVALEYLASQSHLQEQRNGWTHSSSQSSQSSPSQQNKTTNGQESNP 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41549578 41552174 - Maker00025439 Lcy13g2262 652567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2262 386 Pfam Protein kinase domain 72 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2262 386 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524(InterPro)
Lcy13g2262 386 Gene3D Transferase(Phosphotransferase) domain 1 147 371 - -
Lcy13g2262 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy13g2262 386 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2262 386 SMART serkin_6 71 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy13g2262 386 FunFam Serine/threonine-protein kinase PBS1 147 363 - -
Lcy13g2262 386 MobiDBLite consensus disorder prediction 30 50 - -
Lcy13g2262 386 Gene3D Phosphorylase Kinase; domain 1 40 146 - -
Lcy13g2262 386 FunFam probable serine/threonine-protein kinase RLCKVII 42 146 - -
Lcy13g2262 386 PANTHER OS07G0668900 PROTEIN 41 373 - -
Lcy13g2262 386 SUPERFAMILY Protein kinase-like (PK-like) 52 345 IPR011009 -
Lcy13g2262 386 MobiDBLite consensus disorder prediction 355 386 - -
Lcy13g2262 386 CDD STKc_IRAK 77 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2262 Lcy-Chr13:41549578 Lcy9g2323 Lcy-Chr9:47609372 1.81E-199 dispersed
Lcy13g2261 Lcy-Chr13:41535916 Lcy13g2262 Lcy-Chr13:41549578 3.81E-94 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65595 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2262 - - - 0.0