Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2270 ATGGGGGGAGGTGGCGGTGGCGGTGCACAAAGTAGGGAGTTGGATCAGACTCCAACATGGGCCGTTGCCGCTGTTTGTGCAGTCATCATTCTTATTTCGATCATATTGGAAAAAGTTCTTCACAGGGTTGGAGAGATATTTCAAGAAAAGAAAAAGAAAGCGTTGTATGAAGCACTCGAGAAAGTCAAAGGCGAACTGATGGTTTTAGGATTCATTTCTTTGCTTTTGACATTCGGACAAAGTTACATGGCTAAAGTTTGCATACCCTCAAGGTATGCAAATACAATGTTGCCTTGCCCTTATAGAGGGAATGCACCTAAAACCTCCCATGGCATTGAGCCCGAAGAGCACGAAGAAGAGTCCGACGACCACCATCGTAGGCTTCTTTGGTACGAGCATCGACATCTTGCTGGCGGTGGTGCCGTTGAAAGCTGCAAAACAGGGTATACACAACTTATATCTCTAAATGGTTTGCATCAAATACATATCTTCATCTTCTTTCTAGCAGTCCTCCATGTTGTATTCAGTGGCATAACGATGACTCTCGGAAGATTGAAAATTCGTGGGTGGAAGGTGTGGGAAAAACAGACTGAACAAGAACATGAAGCCATGAACGATCCTACTAGATTCAGGCTTACTCACGAGACATCGTTTGTGAGAGATCACAGCAGTTTCTGGACCAAAACGCCCCTCTCCTTTTACATTGTATGCTTCTTTAGGCAATTCTTCAGGTCGGTTAGTAGAGCTGATTACTTATCACTCAGACATGGTTTTGTCACCGTTCATTTAGCACCTGGGAGTAAATTTGACTTTCAAAAGTACATCAAAAGGTCATTAGAAGACGACTTCAAGGTGGTTGTCGGAATCAGTCCTCTACTATGGGCATCAATGGTGCTTTTTCTGCTTCTTAATGTTAGTGGGTGGCAAGTCATGGGTTGGGTGTCTATATTTCCTCTACTGGTGATATTAGCGGTTGGAACGAAGTTGCAAGGAATTATAACTCAAATGGCGCTTGAAATCAAGGAAAGACATGCAGTGGTTCAAGGGATTCCCCTCGTCCAAGTCTCTGACAGACACTTCTGGTTCGGTTGGCCTGTTTTGGTTCTTTATCTCATCCATTATGTCCTCTTCCAGAATGCATTTGAGATTACATATTTCTTTTGGATATGGTATGAATTTGGGTTGAGATCATGCTTTCACGAAAACTTTGACCTTATTATCATCAGAGTTGGCCTTGGGGTTGGAGTCCAGATTTTGTGCAGTTACATCACACTCCCGTTATATGCTCTCGTCACTCAGATGGGTTCGACGATGAAGAAATCTATATTCGACGAACAAACTTCAAAAGCATTGAAGCAATGGCATAAAAGTGCTTTGAAGAAAAAGAACGACGGAGGAAAGCCTGAGCCAATGCCGATGCGAACTTTAGGGGCCATAGGAAGCCCTCCCGAGTCGCCGATGCAAGCCGGCCTGCAACATAACTTCAAACATCAATCGAACCCTCCGGTCGACGTCGAGGCTTCCGCCGCTCCTTCTGCCAATATAATGGCCACCGTCGATCTCCAGCAGCAGCAGCAAAATTACGCCAATCGTGACTTGTTGAGCTGA 1608 44.71 MGGGGGGGAQSRELDQTPTWAVAAVCAVIILISIILEKVLHRVGEIFQEKKKKALYEALEKVKGELMVLGFISLLLTFGQSYMAKVCIPSRYANTMLPCPYRGNAPKTSHGIEPEEHEEESDDHHRRLLWYEHRHLAGGGAVESCKTGYTQLISLNGLHQIHIFIFFLAVLHVVFSGITMTLGRLKIRGWKVWEKQTEQEHEAMNDPTRFRLTHETSFVRDHSSFWTKTPLSFYIVCFFRQFFRSVSRADYLSLRHGFVTVHLAPGSKFDFQKYIKRSLEDDFKVVVGISPLLWASMVLFLLLNVSGWQVMGWVSIFPLLVILAVGTKLQGIITQMALEIKERHAVVQGIPLVQVSDRHFWFGWPVLVLYLIHYVLFQNAFEITYFFWIWYEFGLRSCFHENFDLIIIRVGLGVGVQILCSYITLPLYALVTQMGSTMKKSIFDEQTSKALKQWHKSALKKKNDGGKPEPMPMRTLGAIGSPPESPMQAGLQHNFKHQSNPPVDVEASAAPSANIMATVDLQQQQQNYANRDLLS 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41607802 41615380 + Maker00025446 Lcy13g2270 652575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2270 535 MobiDBLite consensus disorder prediction 458 506 - -
Lcy13g2270 535 MobiDBLite consensus disorder prediction 487 501 - -
Lcy13g2270 535 PANTHER MLO-LIKE PROTEIN 1 5 523 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy13g2270 535 Pfam Mlo family 12 467 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0298 Lcy-Chr11:4832009 Lcy13g2270 Lcy-Chr13:41607802 9.06E-134 dispersed
Lcy13g0561 Lcy-Chr13:7109589 Lcy13g2270 Lcy-Chr13:41607802 1.95E-76 dispersed
Lcy13g2270 Lcy-Chr13:41607802 Lcy6g2364 Lcy-Chr6:48434105 6.28E-193 dispersed
Lcy13g2270 Lcy-Chr13:41607802 Lcy1g0545 Lcy-Chr1:4704078 4.36E-204 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2270 K08472 - csv:101208890 920.998