Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2276 ATGTCGGGATCTGAGGCTGGTGTGATGACGAGCAGAGAACCCTTCAGCGTCGGCGTTCAGAATAGCTCCTTACAGTCGCAGGCGGCGGCTCAAAATATGCGATTAACCTTCAGCGCCGATGGCACAGCCGTGTACAAGCCTGTAACTCCTTCAACGTCCCCGTCCTACCAATCCTCCATGGCCGGAGTTTCCGGTAACGCCGGAATTGAGGGATCGGCTGGTGGGGGCTCTATGTTGCCTCATGGGTTCAACATAAATTCGGTGGGCAGTGAGCAAATAAAGAGAAAGAGGGGCAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCACTAGCTTTAGGTTCTGGGCCGCCATCAGGAATTGGAGGTTTTTCTCCTTCATCAACTATGGCTAATCCTGCTTCAGAAGGATTGGCCTCACCAAATTCATTGAAGAAAACTAAAGGCAGGCCACCTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTGGGTAACTATTATAAGCGCCTTGTCCAATACTCCTTCCAGTTGGGAGAAAGGAAAGGGAATCTTACTTTGGTTGACTTTAGAGTCCAAGCAATGCTATTGTTTATGAAACTATTTTGTGAATTATTTTACCTTATGCTCTTATTGAAAACTGAGCATCTTACTGAGCAATTAATTGCAGGATCGGCTGGTATTGGATTCACTCCACATGTTATCGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGGGCTATTTGTATCCTCTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGGCGGTTTGAAATTTTGTCACTTTCAGGTTCATTTCTGCTGTCTGAAAATGGTGGTCAAAGAAGCAGAACTGGTGGTTTGAGCGTGTCTTTGTCTGGCCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCAGGTCTTCTCACGGCTGCATCTCCTGTTCAGGTGGTCGTTGGAAGCTTCATAGTCGACAGCAACAAGGAACCAAAGTCAGCCCGCCAAACCGAACCCGTCGGTGCCTCAACAATGCTAAACCCAGTAAGCTTTGGTCACTTGACAGGAGGAGCTAGTAGTCCATCTCATGGGACGCTGAGCGAGTCTTCCGGTGGTGGCAGCCCCCTTAACAACAGCTCCGGAGCCTGCAACAACAGCAACCATCCACAGGGCATGTCTGGCATGCCATGGAAGTAA 1260 48.41 MSGSEAGVMTSREPFSVGVQNSSLQSQAAAQNMRLTFSADGTAVYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGIGGFSPSSTMANPASEGLASPNSLKKTKGRPPGSKKKQQLEALGNYYKRLVQYSFQLGERKGNLTLVDFRVQAMLLFMKLFCELFYLMLLLKTEHLTEQLIAGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIVDSNKEPKSARQTEPVGASTMLNPVSFGHLTGGASSPSHGTLSESSGGGSPLNNSSGACNNSNHPQGMSGMPWK 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41652746 41656357 - Maker00025169 Lcy13g2276 652581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2276 419 FunFam AT-hook motif nuclear-localized protein 1-like 231 361 - -
Lcy13g2276 419 Pfam Plants and Prokaryotes Conserved (PCC) domain 231 344 IPR005175 -
Lcy13g2276 419 Gene3D - 231 362 - -
Lcy13g2276 419 MobiDBLite consensus disorder prediction 72 158 - -
Lcy13g2276 419 MobiDBLite consensus disorder prediction 358 413 - -
Lcy13g2276 419 CDD DUF296 230 344 IPR005175 -
Lcy13g2276 419 SUPERFAMILY AF0104/ALDC/Ptd012-like 229 345 - -
Lcy13g2276 419 MobiDBLite consensus disorder prediction 349 419 - -
Lcy13g2276 419 ProSiteProfiles PPC domain profile profile. 225 369 IPR005175 -
Lcy13g2276 419 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 397 IPR039605 GO:0003680(InterPro)
Lcy13g2276 419 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2276 Lcy-Chr13:41652746 Lcy6g2037 Lcy-Chr6:43325648 1.02E-57 dispersed
Lcy13g2276 Lcy-Chr13:41652746 Lcy9g2354 Lcy-Chr9:47824431 2.00E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2276 - - - 0.0