Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy13g2288 | ATGTCATCAAGTAGACCGAGCCAGTCCACGAACACGGGAGGATCCTCGTCGTCCTCACAATCAAGACACAGCACTCGAATCCTCACTCAAACCTCCATAGACGCAAAGCTCCACTCCCACTTCGAACAATCTGGCTCTTCCTTCGACTACTCCACTTCAGTCCATCTCACAACCAATCCACCGCCGCCAACCACCACCACCACAACCACCGCATACCTCCACCACATCCAAAAATCCAACCTCATCCAGCCCTTCGGCTGCCTCTTGGCCCTCCACCCAACCTCCCTCAAGCTCATCGCCTTCAGCCAAAACGCCCCCGAATTCCTCACCTCCGTCACCCACACCGTCCCCACCATCTCCGACCACCCCCTCCTCTCCCTCGGCTCCGACCTCCGCTCCATCTTCACCGCCCCCTCCGCCGCCGCCCTCCTCAAGGCCCTCGCCTTCCCTGACCTCACCCTCCTCAACCCCATTCTCGTCCACTCCAAGTCCTCCGGCAAGCCCTTCTACGCCATCGTCCACCGTGTCACCGCCAGCCTCATCATCGACTTCGAACCCGTCAAGCCCGATGAAGTCCCGATCACCGCCGCCGGGGCTCTCCAGTCCTACAAGCTCGCAGCCAAAGCCATCACTCGCCTCCAAGCTCTCCCCAGCGGGAGCATGGCCAGGCTCTGTGACACCATGGTCCAAGAGGTCTTTGAGCTGACGGGTTATGACAGGGTCATGGCTTATAGGTTTCACGATGACGATCATGGGGAGGTTTTCTCTGAGGTTACTAAGCCTGGGCTCGAGCCTTATCTGGGTCTGCATTATCCTGCCACTGACATTCCTCAGGCTGCCAGGTTCTTGTTCATGAAGAATAAGGTTAGAATGATTGTGGACTGCAGAGCCAAGCATGTCAAGGTGCTTCAAGATCCAAACCTTGAGTTTGATTTGACTTTGTGCGGCTCCACTTTGAGGGCTCCTCATACTTGCCATTTGCAGTATATGGAGAATATGGATTCTATTGCTTCTTTGGTCATGGCAGTTGTGGTGAATGATCAGGAGGATCAAGAGGAATTTGATCATAATACTAATCAGAAACACAAGAGGAAAAGATTGTGGGGTTTGGTGGTTTGTCATAATACAACACCTAGATTTGTTCCTTTTCCTCTTAGATATGCTTGTGAGTTTCTAGCTCAAGTGTTTGCCATTCATGTGAACAAGGAATTGGAGTTGGAGAGTCAGATTTTGGAGAAGAATATCTTGAGAACTCAAACGCTTTTGTGTGACATGTTGATGCGTGATGCTCCTTTGGGGATTGTGTCAAGGAGCCCTAATATAATGGATCTTGTCAAATCTGATGGGGCTGCATTGTTGTACAAGAATAAGGTATGGAGATTGGGGATTACTCCCAGTGATTTTCACCTTCATGACATTGCTTCATGGATTTTGGAGTATCATATGGATTCCACTGGCTTGAGTACTGATAGCTTGTACGATGCCGGGTACCCCGGCGCGCTTGCCCTAGGCGATGCCGTGTGCGGGATGGCGGCCGTGAGGATAGCTTCCGACGACATGATCTTCTGGTTCCGATCGCACACTGCGTCGGAGATCCGGTGGGGCGGGGCGAAGCACGAGCCTGGTGAGAAGGATGATGGAAGGAAAATGCATCCCAGGTCATCTTTCAAGGCTTTTCTTGAAGTGGTCAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATCCATTCTTTGCAACTCATCCTAAGAAACACTTACAAAGATACAGATAGTGTGAGTGAGATCAATAGAAAATCAATACAATCCACACTCAGTGACCTTAAAATTGATGGGAGGCAAGAACTGGAATCAGTAACAAGTGAGATGGTCAGGCTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTGGATGGATTGGTTAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTGACAAAGCTATTGGCAAGCATTTGCTCACATTGGTGGAAGATTCTTCTGTAGAAATTGTTAAGAAGATGCTGTTCTTGGCATTGCAAGGCCAAGAAGAGAAAAACGTTCAATTTGAGATAAAAACACACGGCTGTCAGTCTGAGATCGAGTCAGCTGGCTCCATAAGCCTAATAGTAAATGCTTGTGCAAGCAAGGACTTAAGCGAAAACGTAGTGGGAGTTTGCTTTGTAGCACAAGACATAACTCATCAAAAGCTGGTAATGGACAAGTTCACAAAATTACAAGGCGATTACAAAGCCATAGTACAAAACCCCAACCCACTGATCCCTCCAATCTTCGGCCTAGACGAATTCGGCTGGTGCACTGAATGGAACTTAGCAATGACAAAGCTAAGTGGGTTCTCACGTGAACAAGTCCTCAACAAAATGCTCTTAGGAGAGGTTTTTGGCACACAACAAAGGTCCTGTTGCCATCTAAAGAACCAAGAAGCCTTTGTGAATCTTGGCATCGTCTTGAACAATGCCATGAGCGGCCAGGACCCTGAAAAGATTTCGTTTGGCTTCTTTGCCAGAAATGGGATGTTCGTAGAATGTCTTCTGTGTGTCAACAAGATTGTGGATGGAGATGGTGGAGTGATTGGCGTTTTTTGCTTTCTGCAACTCGCCAGCCAAGAGCTTCAACAGGCTTTGAATGTTCAAAGATTGTGTGAGAGAACGGCTTTGAAGAGACTGAAGGCATTGGGATATATCAAGAGGCAGATTCGTAATCCTCTTTGTGGGATTGTTTTCTCAAGGAAAATGTTGGAACGAACTCAGCTGGGAGTAGAACAGAAGCAACTTTTGCTTAATAGTTTCAATTGTCAGAGGCAGATCTCCAAGGTTCTTGATGAGTCGGATGATCTTGATCACATCATTGAAGGTTTGATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATCAGTCAAGTGACGATGAAGAGCAAAGGGAAAGGTATCCAAATAGTAAATGAGGTTGCTGAAGAGATCATGTCTGAGACCTTATATGGAGACAATTTGAGACTTCAACAAGTCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGGCCAACTCTTGCTTACAACCAATTTGACTAAGGATCATTTAGGAAACTCAGTACATCTTGTGCATGTGGACTTCAGGATAACCTATGTAGGTGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGAAGCGATGAGGATGCATCAGAAGAAGGTTTTAGCTTACTCATAAGTAGAAAGCTGGTGAAGATGATGAATGGAGATGTGAGATATGTGAGGGAAGCAGGCAAGTCAAGCTTCATCTTAACTGTTGAGCTTGCTGCAGCAAATAATAATCAAGTTAAGAACAACCTAAGCTAA | 3417 | 46.74 | MSSSRPSQSTNTGGSSSSSQSRHSTRILTQTSIDAKLHSHFEQSGSSFDYSTSVHLTTNPPPPTTTTTTTAYLHHIQKSNLIQPFGCLLALHPTSLKLIAFSQNAPEFLTSVTHTVPTISDHPLLSLGSDLRSIFTAPSAAALLKALAFPDLTLLNPILVHSKSSGKPFYAIVHRVTASLIIDFEPVKPDEVPITAAGALQSYKLAAKAITRLQALPSGSMARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVLQDPNLEFDLTLCGSTLRAPHTCHLQYMENMDSIASLVMAVVVNDQEDQEEFDHNTNQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKVWRLGITPSDFHLHDIASWILEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAAVRIASDDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTYKDTDSVSEINRKSIQSTLSDLKIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVDKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKNVQFEIKTHGCQSEIESAGSISLIVNACASKDLSENVVGVCFVAQDITHQKLVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCTEWNLAMTKLSGFSREQVLNKMLLGEVFGTQQRSCCHLKNQEAFVNLGIVLNNAMSGQDPEKISFGFFARNGMFVECLLCVNKIVDGDGGVIGVFCFLQLASQELQQALNVQRLCERTALKRLKALGYIKRQIRNPLCGIVFSRKMLERTQLGVEQKQLLLNSFNCQRQISKVLDESDDLDHIIEGLIDLEMVEFSLYEVLVVSISQVTMKSKGKGIQIVNEVAEEIMSETLYGDNLRLQQVMADFLLISVNYAPTGGQLLLTTNLTKDHLGNSVHLVHVDFRITYVGGGIPESLLNEMFGSDEDASEEGFSLLISRKLVKMMNGDVRYVREAGKSSFILTVELAAANNNQVKNNLS | 1138 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 41793103 | 41797901 | - | Maker00025187 | Lcy13g2288 | 652593 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 719 | 736 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 552 | 570 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 519 | 538 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 320 | 341 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 135 | 157 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 624 | 640 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 235 | 254 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 434 | 454 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 643 | 658 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PRINTS | Phytochrome signature | 739 | 759 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | ProSiteProfiles | Histidine kinase domain profile. | 909 | 1129 | IPR005467 | - | |
| Lcy13g2288 | 1138 | Gene3D | PAS domain | 617 | 755 | - | - | |
| Lcy13g2288 | 1138 | PANTHER | OS08G0260000 PROTEIN | 1 | 711 | - | - | |
| Lcy13g2288 | 1138 | SMART | HKATPase_4 | 1015 | 1127 | IPR003594 | - | |
| Lcy13g2288 | 1138 | Coils | Coil | 401 | 421 | - | - | |
| Lcy13g2288 | 1138 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 320 | 329 | IPR013516 | - | |
| Lcy13g2288 | 1138 | Gene3D | PAS domain | 75 | 323 | - | - | |
| Lcy13g2288 | 1138 | Gene3D | - | 201 | 565 | IPR029016 | - | |
| Lcy13g2288 | 1138 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1015 | 1125 | IPR003594 | - | |
| Lcy13g2288 | 1138 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 220 | 394 | IPR016132 | - | |
| Lcy13g2288 | 1138 | FunFam | Phytochrome | 617 | 751 | - | - | |
| Lcy13g2288 | 1138 | Pfam | Phytochrome region | 417 | 590 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lcy13g2288 | 1138 | PIRSF | Phytochrome_conventional | 2 | 1134 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Lcy13g2288 | 1138 | NCBIfam | PAS domain S-box protein | 628 | 745 | IPR000014 | - | |
| Lcy13g2288 | 1138 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Lcy13g2288 | 1138 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 627 | 702 | IPR035965 | - | |
| Lcy13g2288 | 1138 | SUPERFAMILY | GAF domain-like | 412 | 589 | - | - | |
| Lcy13g2288 | 1138 | FunFam | Phytochrome | 409 | 540 | - | - | |
| Lcy13g2288 | 1138 | SMART | gaf_1 | 220 | 414 | IPR003018 | GO:0005515(InterPro) | |
| Lcy13g2288 | 1138 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 76 | 190 | IPR035965 | - | |
| Lcy13g2288 | 1138 | CDD | PAS | 632 | 741 | IPR000014 | - | |
| Lcy13g2288 | 1138 | Gene3D | - | 946 | 1120 | IPR036890 | - | |
| Lcy13g2288 | 1138 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 771 | 878 | IPR035965 | - | |
| Lcy13g2288 | 1138 | CDD | PAS | 768 | 880 | IPR000014 | - | |
| Lcy13g2288 | 1138 | ProSiteProfiles | PAS repeat profile. | 757 | 809 | IPR000014 | - | |
| Lcy13g2288 | 1138 | SMART | pas_2 | 623 | 689 | IPR000014 | - | |
| Lcy13g2288 | 1138 | SMART | pas_2 | 756 | 826 | IPR000014 | - | |
| Lcy13g2288 | 1138 | SMART | HisKA_10 | 902 | 977 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Lcy13g2288 | 1138 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 965 | 1122 | IPR036890 | - | |
| Lcy13g2288 | 1138 | Pfam | GAF domain | 222 | 403 | IPR003018 | GO:0005515(InterPro) | |
| Lcy13g2288 | 1138 | ProSiteProfiles | PAS repeat profile. | 621 | 691 | IPR000014 | - | |
| Lcy13g2288 | 1138 | Pfam | PAS fold | 624 | 741 | IPR013767 | GO:0006355(InterPro) | |
| Lcy13g2288 | 1138 | Pfam | PAS fold | 757 | 880 | IPR013767 | GO:0006355(InterPro) | |
| Lcy13g2288 | 1138 | SUPERFAMILY | GAF domain-like | 200 | 401 | - | - | |
| Lcy13g2288 | 1138 | Gene3D | - | 409 | 582 | IPR043150 | - | |
| Lcy13g2288 | 1138 | Pfam | PAS fold | 71 | 187 | IPR013654 | GO:0006355(InterPro) | |
| Lcy13g2288 | 1138 | Gene3D | PAS domain | 770 | 887 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g2288 | Lcy-Chr13:41793103 | Lcy4g0391 | Lcy-Chr4:4806130 | 0 | dispersed | |
| Lcy13g2288 | Lcy-Chr13:41793103 | Lcy13g2291 | Lcy-Chr13:41827690 | 0 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy13g2288 | K12120 | - | csv:101219585 | 1896.71 |