Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy13g2290 ATGGATCCACCTACTCTGATGAACGAAGGGTCATTTCCGAATAACGCTAATGCCAATGCCAATGTGGCGCCCTACAATCTCTCTGAGATCTGGCAGTTCCCAATTAATGGCGGAGCCGCCGTTGAGGAATCTGGAGGTGGACTCGGCTTGAGGATGGCCCACTTCGCTCATAATTTGGGCCAGTTTGGAGAGATTGCCATGGGGAATCGAGACGTTTCGCGTGGTGATCCGGTGAGCTTGCAATTGCAGCAGAGAGTAGCTCATGGCCATGGCGGTTCCAAGAAGCGCCGTGATGCAGAGCAAGATTCGGCTAAGGTCAGCTCGACCAGCAATGGCAATGGCAATAGCGCCGGGGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCGTGTAGAGATGATAATCACGAATCTAAAACAGAAGCAGAACCCAGATCTGGCAAGGCCGAGCAGAACTCCCAGCCCCCACCAGAACAACCCAAACAGGATTACATTCATGTCCGAGCAAGAAGGGGCCAGGCAACTGATAGCCATAGTTTGGCAGAGAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTTCAGGATTTGGTCCCTGGGTGCAATAAGGTTATTGGAAAAGCACTCGTTCTTGATGAGATAATAAATTACATTCAATCGCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCCAGAATTAGTCCTGGCATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAGACATTCGATACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGGTCATCACCAGAATGGTTGCATATGCAGATTGGTGGCGGTTTCGAAAGAACGACGTAG 888 48.42 MDPPTLMNEGSFPNNANANANVAPYNLSEIWQFPINGGAAVEESGGGLGLRMAHFAHNLGQFGEIAMGNRDVSRGDPVSLQLQQRVAHGHGGSKKRRDAEQDSAKVSSTSNGNGNSAGANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRISPGIEVFPPKDYGQQTFDTTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 41809983 41813038 - Maker00025425 Lcy13g2290 652595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy13g2290 295 SMART finulus 180 230 IPR011598 GO:0046983(InterPro)
Lcy13g2290 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 242 IPR036638 GO:0046983(InterPro)
Lcy13g2290 295 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 250 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy13g2290 295 Coils Coil 221 241 - -
Lcy13g2290 295 CDD bHLH_AtBPE_like 164 249 - -
Lcy13g2290 295 Pfam Helix-loop-helix DNA-binding domain 178 225 IPR011598 GO:0046983(InterPro)
Lcy13g2290 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 224 IPR011598 GO:0046983(InterPro)
Lcy13g2290 295 MobiDBLite consensus disorder prediction 85 162 - -
Lcy13g2290 295 MobiDBLite consensus disorder prediction 127 147 - -
Lcy13g2290 295 MobiDBLite consensus disorder prediction 104 122 - -
Lcy13g2290 295 Gene3D - 171 244 IPR036638 GO:0046983(InterPro)
Lcy13g2290 295 FunFam Basic helix-loop-helix transcription factor 171 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2290 Lcy-Chr13:41809983 Lcy2g0610 Lcy-Chr2:5215513 3.13E-88 dispersed
Lcy13g2290 Lcy-Chr13:41809983 Lcy3g1006 Lcy-Chr3:33992068 3.69E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19467 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy13g2290 - - - 0.0